GgaALTA0002003-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000004050 | F1NWE0_CHICK
Description
NA
Coordinates
chr14:2270787-2272464:-
Coord C1 exon
chr14:2272302-2272464
Coord A exon
NA
Coord C2 exon
chr14:2270787-2270890
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGG
5' ss Score
8.21
3' ss Seq
GCGATTTGCGCCATTTCCAGGTG
3' ss Score
7.95
Exon sequences
Seq C1 exon
ATTTCCGAGAAATATGGGCCAGTGTTCACTGTCCACCTGGGGATGCAGCAAGTGGTGGTGCTGAGCGGCTACGAGGCAGTGAAGGATGCACTTCTGAACACAGCGGATGTGTTTGCAGACAGACCCCCTATCCCCATCTTCCATCAGATCCAGCATGGAAATG
Seq A exon
NA
Seq C2 exon
GTGGGCCATTCCGACTTCGGCTTTTGAATGCGGCCCCCACCAACATCACCTTTGCCATGCTCTTTGGGAGAAGGTTTGACTACGGAGACCCAACGTTTGTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004050-2-4,2-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(32.5=100)
A:
NA
C2:
PF0006717=p450=FE(20.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGACCCCCTATCCCCATC
R:
ACGTTGGGTCTCCGTAGTCAA
Band lengths:
142-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]