GgaALTA0002002-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000004050 | F1NWE0_CHICK
Description
NA
Coordinates
chr14:2270986-2272464:-
Coord C1 exon
chr14:2272302-2272464
Coord A exon
chr14:2271115-2271135
Coord C2 exon
chr14:2270986-2271114
Length
21 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGG
5' ss Score
8.21
3' ss Seq
GCCATGCCATCCCTCCGTAGGTG
3' ss Score
10.42
Exon sequences
Seq C1 exon
ATTTCCGAGAAATATGGGCCAGTGTTCACTGTCCACCTGGGGATGCAGCAAGTGGTGGTGCTGAGCGGCTACGAGGCAGTGAAGGATGCACTTCTGAACACAGCGGATGTGTTTGCAGACAGACCCCCTATCCCCATCTTCCATCAGATCCAGCATGGAAATG
Seq A exon
GTGTGTTCTTCTCTTCCCAAG
Seq C2 exon
AGCTCTGGAAGACAACACGGAGGTTCACCTTGGCGGTTATGCGGGATCTGGGCATGGGGAAGCGGCTTGCGGAGGAAAGGATGCTCGAGGAGCTTCAGTTTCTCATTGAGCTGATCAAATCCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004050-2-2,2-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(32.5=100)
A:
NA
C2:
PF0006717=p450=FE(30.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGAGGCAGTGAAGGATGC
R:
CTCCGTGTTGTCTTCCAGAGC
Band lengths:
117-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]