GgaINT0016193 @ galGal3
Intron Retention
Gene
ENSGALG00000004050 | F1NWE0_CHICK
Description
NA
Coordinates
chr14:2270986-2272464:-
Coord C1 exon
chr14:2272302-2272464
Coord A exon
chr14:2271136-2272301
Coord C2 exon
chr14:2270986-2271135
Length
1166 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGG
5' ss Score
8.21
3' ss Seq
GCCATGCCATCCCTCCGTAGGTG
3' ss Score
10.42
Exon sequences
Seq C1 exon
ATTTCCGAGAAATATGGGCCAGTGTTCACTGTCCACCTGGGGATGCAGCAAGTGGTGGTGCTGAGCGGCTACGAGGCAGTGAAGGATGCACTTCTGAACACAGCGGATGTGTTTGCAGACAGACCCCCTATCCCCATCTTCCATCAGATCCAGCATGGAAATG
Seq A exon
GTACGGTGCCTTGCAGAGATCGGCACGCTCACTGCTGTTTTCCAGACGTGTTCTTTCAGTTTCAACCGCATTTAGGAGTCCTGAGCCCATCGGTGACGGTGCTGGGTGGGGTTGGGGCAGTTTGCTTTCTACAGAAGAGCAGCTGTGGGCACTTCCTTATTTGCCTTATCCATTTTTTTGCTTTTCGCAGCACTTGGGTCACATTTCCAGGGTTCTGCTGTAGTGCAGAGGGAAGGAAATGATTTTTCACATGAAGGCTGAGGTCCTTATGCAATCTCTCTTCTGCAGTTACTGGCAGTTCAGACAGCCTGGATCATGCATGACTCATGATAAAGACTGCAAGAACTGGCAGGAGCGCAATAGCACGAGCTGTTTGTACCTCAAACAATTACTTCTGTAAACAGATTTTTGGCATATTTCTGCATTGCATGCTAAGAAGTAATACATTGCCCAAGACGAGACATTGAAAAACAGTGAAGGGAATAATCCAGGGCTGAAAGGAAAAGATTTGATGACCTAATATGTATATAATGCATACAGCGTGTGGGGTTTCTTCATCTTGTTTTTAAGAGTGAGGCCCAGGGTGAGGAGGGGTACACTGTGTGAAGATGCAGACCATGCTCAGCCCAGAAGCCAGCTGGGCAGGGAGCACTGCCGTGCCACCAGGGCTGCCTGCTGCGCTGGTCTCTGCCAAACAGGAGAGCTTTTGGCATCACCTAAGGCCAGCTGGGGAGATTTCCCAGCTGTAAGCTGTGATTCCTCCCTGACACCCCTCCTTGTCCCCTTGCACAGAAGAAAGTTCATCCTCTAAAACGCAACAGGGAAATCATTTGTCCTGTGCATGACACGGACAGAGCAGTGTCATCTGCTCCGAGCCTTGCTCTCTGAAACAGCTGTATTGTTTTCCTGAGGGAAAACAAGTCAGTCCGAGACAAATACCACGCACTGAGCTTTTGCTGTGTGTGGCTGCAAAGGGACAAAGCTATAAGTAGGCGAAACCCAGAGATGTGAACAGCAGATTGCCTCCTGCCCTACGGAACCTGCCTGGGGCTGGGCTCTCCTGGGGCAGCCCTCCCCCAGCACCCAGCCCTGCAGGCCACAGGGCCCCTATGTACCAAGCAAACCCCCTAGCAGCTGTGCAGCCACGCCATGCCATCCCTCCGTAG
Seq C2 exon
GTGTGTTCTTCTCTTCCCAAGAGCTCTGGAAGACAACACGGAGGTTCACCTTGGCGGTTATGCGGGATCTGGGCATGGGGAAGCGGCTTGCGGAGGAAAGGATGCTCGAGGAGCTTCAGTTTCTCATTGAGCTGATCAAATCCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004050:ENSGALT00000006446:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(32.5=100)
A:
NA
C2:
PF0006717=p450=FE(30.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAGAAATATGGGCCAGTG
R:
CTTGAAAGGATTTGATCAGCTCA
Band lengths:
310-1476
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]