DreINT0054246 @ danRer10
Intron Retention
Gene
ENSDARG00000098995 | cyp2k6
Description
cytochrome P450, family 2, subfamily K, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1571]
Coordinates
chr3:12669612-12670003:+
Coord C1 exon
chr3:12669612-12669774
Coord A exon
chr3:12669775-12669853
Coord C2 exon
chr3:12669854-12670003
Length
79 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
ACACGTCTCTAAATCTGTAGGCA
3' ss Score
7.05
Exon sequences
Seq C1 exon
CTGTCGAAAAAATACGGGCCAATTTACACGGTGTATTTGGGGCCTAAAAAGGTGGTAATACTGTCAGGATACAAAATAGTCAAGGAGGCACTAGTGAACCTTTCAGAGGAGTTTGGAGATAGAGATATTTCACCCATATTCCATGATTTCAACCGTGGATATG
Seq A exon
GTAAGATGTTTTTCTCATATTCGGATAACCACATAATAAACAGGTTTTTATTACACCTAACACGTCTCTAAATCTGTAG
Seq C2 exon
GCATTGCGTTTTCCAATGGTGAAAACTGGAGAGAAATGAGACGCTTTGCTCTGTCCACCCTACGAGACTTTGGAATGGGCAGAAAGAGAAGCGAAGAGCTGATCATTGAAGAGATTAAATATGTAAAGGAGGAATTTGAGAAGTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098995:ENSDART00000170788:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGCCAATTTACACGGTGTA
R:
TCACCATTGGAAAACGCAATGC
Band lengths:
171-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]