HsaINT0044205 @ hg19
Intron Retention
Gene
ENSG00000197838 | CYP2A13
Description
cytochrome P450, family 2, subfamily A, polypeptide 13 [Source:HGNC Symbol;Acc:2608]
Coordinates
chr19:41594834-41596101:+
Coord C1 exon
chr19:41594834-41594996
Coord A exon
chr19:41594997-41595951
Coord C2 exon
chr19:41595952-41596101
Length
955 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
CCCCGCGTTCACCTCCCCAGGCG
3' ss Score
9.31
Exon sequences
Seq C1 exon
ATCAGTGAGCGCTATGGCCCTGTGTTCACCATTCACTTGGGGCCCCGGCGGGTCGTGGTGCTGTGCGGACATGATGCCGTCAAGGAGGCTCTGGTGGACCAGGCTGAGGAGTTCAGCGGGCGAGGCGAGCAGGCCACCTTCGACTGGCTCTTCAAAGGCTATG
Seq A exon
GTGAGGGGGTGCCCAAGAGGGGGAAGGTGGCCAGGTGGATGCAATGGTCTCCGTGTCCCCAGCCTTCTCCCTGACTCTCCTGCCCACTGGAGGCTATGGCAGAGCCCCCTGTCTGGTCTTCTCTCCCCATCTCCCTTCATCGTGGCCTCTCCCTGTGCGTCCCTCACCTGTCTCCAGCGTCCCTGTCGTGATTCCTCCCTGCCTCTCTCTGCCCCGTCTCCTCCTTCTCTCTCACTGGAGTCTCCTCTTTCCCCTCTCTCTCCATCTCTGAGGACATCCTGGGTTTCTGTTTTCCAGCCCTGGTCCTCTGTCTTCATTTGTCTTTTTGTCGCTCTCGGCTTCTGTGCTTCTCCGTGTTTCTCCTCTCTCTGCTTCCCTCTCCCACTTCTTCCTCTGTCTTAGGATTTCAGGGTATTCCTACTTCCACATCTCCAGCCTCCAACTCCTGGTAATTGTCTGTCCTCCTTCCCGATCCTCTCTGTTTCTGTCTCCATATTTTTCTCTCTTCTCCAGTTCAGCTTAAGAATCTTTCACCATTTTTATTTCCTCCTCCCAGATCTCCCCATATCTCACTTCCCCTCCCTCCATCTCTCTCTTTCTCTCCCCACTTCCTTCCCTTCCTCCATGGAGTATCCCCGTATCCCTCTGTTTCTCTGCATCTGTCTGTCTGGCCTTTCTGCTTCTCTTCTGATTCTCTTATTCTTTCTACCCGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTGCTCTCGTGTTTCTCTGACTGAGTTTGCAGCTCTCCTGGGCACTCGCGCTGAATCCATCTCTCTCCCACCCCACTCCCTCTCTGCTCCACCCTTGGGGAGCCCCTTGGAGCTGGTCCGCTCCTGCTCCCGCCGCCCCCTGACCTCTCTCCACCCCCGCGTTCACCTCCCCAG
Seq C2 exon
GCGTGGCGTTCAGCAACGGGGAGCGCGCCAAGCAGCTCCGGCGCTTCTCCATCGCCACCCTAAGGGGTTTTGGCGTGGGCAAGCGCGGCATCGAGGAACGCATCCAGGAGGAGGCGGGCTTCCTCATCGACGCCCTCCGGGGCACGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197838-CYP2A13:NM_000766:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGTGAGCGCTATGGCCC
R:
CGGAGGGCGTCGATGAGG
Band lengths:
302-1257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)