MmuINT0044751 @ mm9
Intron Retention
Gene
ENSMUSG00000060407 | Cyp2a12
Description
cytochrome P450, family 2, subfamily a, polypeptide 12 [Source:MGI Symbol;Acc:MGI:105055]
Coordinates
chr7:27814581-27815904:+
Coord C1 exon
chr7:27814581-27814743
Coord A exon
chr7:27814744-27815754
Coord C2 exon
chr7:27815755-27815904
Length
1011 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
TCATGTTCTTATCTTTACAGGTG
3' ss Score
11.54
Exon sequences
Seq C1 exon
CTCCAAGAGCACTATGGCCCTGTGTTCACCATCCACCTTGGGCCTCGCCGGGTTGTGGTGCTTTATGGATACGATGCAGTCAAAGAGGCTTTGGTGGACCACGCTGAGGAGTTCAGTGGACGAGGCGAACAGGCCACCTTTAATACACTCTTCAAAGGCTATG
Seq A exon
GTAAGGAGGATCTGAAATCTGGGATTGTAGACAGACTTTTGCTACTTTGTGGGTTCTTCTTTCGTCCACCCTTCACCCTCTTTGCCTTTTAACCTCCTAACACTAGATAGGAGACAAAAAGAGAGGCAAATGGGAACAAAATTGTTAGACTACTTCCTGCTGATTAGGAGTGATGAGTTCCTTAGGGCAAGTTTAATCTTCACAGTCAGGATATCTAATTTCTTCTTGCTGTTGTTTCTTCGCACAGACTATTTAACAAACCACAACCAACAGCAACCAACCAACAACCAAAACCCTCCTCTTGGGGCCCTAGCATTTATATAACCTCTGAGGAGTCCCAAGAATTCTAAGTGCTTCCTCCTTTCTGCTTCTTCTTCTTCCATGGCTTCCACCAAGGCTCCTCAGTCCCATTCTCCTTTCAAGGTCTCTAGCCCAGTAAACCTAAACCCTGCCTATGTCGCTTCCCCTAACTATTGGCTGCTGGCATCTTTATTTATCAATCAAAATTGACTAGGGCAGAGTCCCTCAGGCTAAGTGCAGACTTCAAATCTTAGAGACTAGCACAATACAATAAACAGTAAAAGACAAAACCTCAACAACCGGGTATGTTTTTATGTAGGCAGTCCTTGCTTTAGTGGGGATTTGCTGTTTTCAGAAAATGCTAAATATTGGTTGATTTAGCCATTTCAGGGACCCAGAGCAGCTAACCAGCATCAAGAGGCGTGATGGAATTGGTCCAGCTAAAATATTGAGGACTAGTCTCCCTGCCTTCTGAGTATCCCTGCTTCTGCCTGTTTGTAACTTTCTGTTTCCTTGCCTGGCTGATTTGTTCCAACTTTCTTATTCTGAGTGTGTCTAATGCAGGGTCTGTGTTTATATATTCTGTGTTCTTCCCATCTCTATCCATCTTTGTATTTATTCTTTTCTCTTAGAAGCCTTTTCCAGTGTGGACCTGGTCCTTCCTCAGCCTCAGTCTGCTTCTCTCCATTCCTCATGTTCTTATCTTTACAG
Seq C2 exon
GTGTGGCATTCAGCAATGGGGAACGAGCCAAACAACTCAGACGCTTCTCTATAGCCACACTGAGAGATTTCGGCATGGGCAAGCGAGGTGTGGAGGAGCGCATCCAGGAGGAGGCAGGCTGTTTGATCAAGATGTTGCAGGGCACTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060407-Cyp2a12:NM_133657:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAGCACTATGGCCCTGTG
R:
CACAAGTGCCCTGCAACATCT
Band lengths:
310-1321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: