HsaINT0044213 @ hg19
Intron Retention
Gene
ENSG00000198077 | CYP2A6
Description
cytochrome P450, family 2, subfamily A, polypeptide 7 [Source:HGNC Symbol;Acc:2611]
Coordinates
chr19:41354519-41355885:-
Coord C1 exon
chr19:41355723-41355885
Coord A exon
chr19:41354669-41355722
Coord C2 exon
chr19:41354519-41354668
Length
1054 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
TCCCGCGTTCACCTCCCCAGGCG
3' ss Score
9.23
Exon sequences
Seq C1 exon
ATCAGTGAGCGCTATGGCCCCGTGTTCACCATTCACTTGGGGCCCCGGCGGGTCGTGGTGCTGTGTGGACATGATGCCGTCAGGGAGGCTCTGGTGGACCAGGCTGAGGAGTTCAGCGGGCGAGGCGAGCAAGCCACCTTCGACTGGGTCTTCAAAGGCTATG
Seq A exon
GTGAGGGGGTGCCCAAGAGGGGGAAGGTGGCCAGGTGGACACGAAGGTCTCAGTGTTCCCAGCCTTCTCCCTGACTCTCCTGCCAACTGGAGGCTAAGGCAGAGTCCCCAGTCTGGTCTTCCCTCCCCATCTCCCTTCATTGTGGCCTCTCCATGTGTATCCCTCACCTGTCTCCAGCGTCCCTGTCCTGATTCCTCCCTGCCTCTCTCTGCCCCACCTCCTTATTCTCTCTCACTGGAGTCTCCTCTTTCCCCTCTCTCTCCATCTCTAAGGACATCCTGGGTTTCTGTTTTCCAGCCCTGGTTCTCTGTCTTCATTTGTCTTTTTGTCCCTCTTAGCTTCTGGGCTTCTCTGTGTTTCTCATCTCTCCGCATCCCTTTCTCACTTCTTCCTCTGTCTTAGGATTTCAGGGTATTCCTACTTCCACATCTTCAGCCTCCATCTCCTGGTAACAGTCTCTCTTCCTTCCAGACCCTCTCTGTTTCTATCTCAATATTTTTCTCTCTTCTCCAGCTCAGCTTAAGAATCTTTCACCATTTTTATTTCCTCCTCCCAGATCTCCCCATATCTCACTTCCCCTCCCTCCATCCTCTTCCTCCATCACTCTCTTTCTCTCCCCACTTCCTTCCCTTCCTCCATGGAGTGTCCCCTTATCCCTCTGTTTCTATGTGCATCTCTCTGTCTGGCCTTTCTGTTTCTTTTCTGATTGTCTTATTCTTTAAACCTGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTTCTCTCTCTCTCTCCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACCTCGACATCGTGTTTCTCTGACTGAGTTTGCAGCTCTGCTGGGCAATGGCGCTGAATCCATCTCTCTCCCACCCTACTCCCTCTCTCCTCCACCCTTGGGGAGCCCCTTGGAGCTGCTCCGCTCCTGCCCCTGCCGCCCCCTGGCCTGTCTCCATTCCCGCGTTCACCTCCCCAG
Seq C2 exon
GCGTGGTATTCAGCAACGGGGAGCGCGCCAAGCAGCTCCGGCGCTTCTCCATCGCCACCCTGCGGGACTTCGGGGTGGGCAAGCGAGGCATCGAGGAGCGCATCCAGGAGGAGGCGGGCTTCCTCATCGACGCCCTCCGGGGCACTGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198077-CYP2A6:NM_000762:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGTGAGCGCTATGGCCC
R:
CGGAGGGCGTCGATGAGG
Band lengths:
302-1356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)