MmuALTA1020280-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:120671541-120674735:+
Coord C1 exon
chr5:120671541-120671685
Coord A exon
chr5:120674567-120674568
Coord C2 exon
chr5:120674569-120674735
Length
2 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CCTCTTTCTCGATTTCCCAGAGG
3' ss Score
8.66
Exon sequences
Seq C1 exon
GCTGTGCAGAGCATTGGGAACCTGGGCCAGCAGCTGGGCCAGGGCAAGGAGCAGTGGCTAGCCCCGCTCCATCCCTTCCTGCTGCAGAGCATCTCACGTGTGAGGGACTTCCTGGACCAGCTGGTGGATGTGGACGAGGATGAGG
Seq A exon
AG
Seq C2 exon
GCCGGGGGTCCAGCCTGCGCCCTGGTCCAACCCTCAACCATTGTTCGAGAAGGCTTCCTGCTGAAGCGCAAGGAGGAGCCTGGAGGCCTGGCCACGCGCTTTGCCTTCAAGAAGCGCTACTTCCGGCTGAGTGGGCGGGACCTCTCCTACTCCAAGACTCCGGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602-38-37,38-36-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(3.2=12.2)
A:
NA
C2:
PF0016924=PH=PU(40.2=74.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGAGCATCTCACGTGTG
R:
ACAATGGTTGAGGGTTGGACC
Band lengths:
108-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types