RnoALTA0033112-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000001374 | Rasal1
Description
RAS protein activator like 1 [Source:RGD Symbol;Acc:1311820]
Coordinates
chr12:41421645-41424762:-
Coord C1 exon
chr12:41424618-41424762
Coord A exon
chr12:41421760-41421813
Coord C2 exon
chr12:41421645-41421759
Length
54 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CCTCCCTTTCTATTTCCCAGAGG
3' ss Score
9.4
Exon sequences
Seq C1 exon
GCTGTGCAGAGCATTGGAAACCTGGGCCAGCAGCTGGGCCAGGGCAAAGAGCAGTGGCTAGCCCCCCTCCATCCCTTCCTGCTGCAGAGCATCTCACGTGTGAGGGACTTCCTGGACCAGCTGGTGGATGTGGATGGGGATGAGG
Seq A exon
AGGCTGGGGGATCAACCTGCGCCCTGGTCCAACCCTCAACAATTGTTCGAGAAG
Seq C2 exon
GCTTTCTGCTGAAGCGCAAGGAGGAGCCTGCAAGCCTGGCCACCCGCTTTGCCTTCAAGAAGCGCTACTTCCGACTGAGTGGGCGGGACCTCTCCTACTCTAAGACTCCTGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001374-23-31,23-30,23-29-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(3.2=12.2)
A:
NA
C2:
PF0016924=PH=PU(40.2=74.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGAGCATCTCACGTGTG
R:
ACTCAGTCGGAAGTAGCGCTT
Band lengths:
144-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]