MmuALTA1021012-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000030145 | Zfp248
Description
zinc finger protein 248 [Source:MGI Symbol;Acc:MGI:1919970]
Coordinates
chr6:118454677-118455528:-
Coord C1 exon
chr6:118455416-118455528
Coord A exon
NA
Coord C2 exon
chr6:118454677-118454738
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
GTGTTTTGTGAAAATGACAGTGT
3' ss Score
2.17
Exon sequences
Seq C1 exon
CCTTCCTCTGCGCATGCGCAAACTGCAGTCCTGCTCCTGGTCCATCCGTGGCCTCGCGTACCTCCTGGGAAACAACTCCTGGCCTTCGGCACGGTGCACTGCAGGAGCGGCGG
Seq A exon
NA
Seq C2 exon
TGTCCTGAAACCATGGAAGACTGTGTGCTCGCCGAAAGTCTGGGACAAGTTTAAGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030145-0-3,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCGCAAACTGCAGTCCT
R:
TCTCTCCTTAAACTTGTCCCAGACT
Band lengths:
162-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types