MmuEX0053121 @ mm10
Exon Skipping
Gene
ENSMUSG00000030145 | Zfp248
Description
zinc finger protein 248 [Source:MGI Symbol;Acc:MGI:1919970]
Coordinates
chr6:118433305-118455528:-
Coord C1 exon
chr6:118455416-118455528
Coord A exon
chr6:118453846-118453887
Coord C2 exon
chr6:118433305-118433431
Length
42 bp
Sequences
Splice sites
3' ss Seq
CATTCTTCCTTCTCCCTCAGCTT
3' ss Score
9.4
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CCTTCCTCTGCGCATGCGCAAACTGCAGTCCTGCTCCTGGTCCATCCGTGGCCTCGCGTACCTCCTGGGAAACAACTCCTGGCCTTCGGCACGGTGCACTGCAGGAGCGGCGG
Seq A exon
CTTTCCCTCCTCCACTCAGAGCAGAAAATGAACAAATCCCAG
Seq C2 exon
GAGCAAGTGTCGTTCAAGGATGTATGCGTGGATTTCACCAAGGAAGAGTGGTATTTGCTGGACCCTGCCCAGAAGGTGCTTTACAGAGATGTGATCCTGGAGAATTATAGCAACTTCGTCTCCGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030145_MULTIEX1-3/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.333 C2=0.013
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTACCTCCTGGGAAACAAC
R:
GTAAAGCACCTTCTGGGCAGG
Band lengths:
142-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types