MmuEX1028415 @ mm10
Exon Skipping
Gene
ENSMUSG00000030145 | Zfp248
Description
zinc finger protein 248 [Source:MGI Symbol;Acc:MGI:1919970]
Coordinates
chr6:118433305-118453887:-
Coord C1 exon
chr6:118453846-118453887
Coord A exon
chr6:118453057-118453169
Coord C2 exon
chr6:118433305-118433431
Length
113 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTCAACTCCTTCCAGATT
3' ss Score
8.52
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
CTTTCCCTCCTCCACTCAGAGCAGAAAATGAACAAATCCCAG
Seq A exon
ATTCTCCACACCCAACTTCATGTTCCTTCTCCTCTGCCAAAAAATCAAAAGAGTCAACATCAACAAAATCCAAAAATTGAAAATAAGACAAAACGAAAAGTACACTTACACAG
Seq C2 exon
GAGCAAGTGTCGTTCAAGGATGTATGCGTGGATTTCACCAAGGAAGAGTGGTATTTGCTGGACCCTGCCCAGAAGGTGCTTTACAGAGATGTGATCCTGGAGAATTATAGCAACTTCGTCTCCGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030145_MULTIEX1-4/5=3-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=1.000 C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSMUST00000069292fB19857
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCCACTCAGAGCAGAA
R:
ACGAAGTTGCTATAATTCTCCAGGA
Band lengths:
156-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types