BtaEX0041169 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013592 | ZNF248
Description
zinc finger protein 248 [Source:HGNC Symbol;Acc:HGNC:13041]
Coordinates
chr28:13225417-13238893:+
Coord C1 exon
chr28:13225417-13225562
Coord A exon
chr28:13225652-13225693
Coord C2 exon
chr28:13238767-13238893
Length
42 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTCTTTCTCCCTCAGCTC
3' ss Score
11.07
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGATCGAACCCAGGTCTCCAGCATTCTTTATGGACTGAGCCACCAGGGAAACCCGGTAATAAATCAGTAAGAAGCAAAAGTTTACATTCACTCGGTGAAAAGTATCAGGTCTAAGGTCAACATAAATGGGAGCCACACATGAGCAG
Seq A exon
CTCTCCCTCCTCCACTAAGAGTGAAAAATGAACAAATCCCAG
Seq C2 exon
GAGCAAGTGTCATTCAAAGATGTATGTGTGGACTTCACCCAGGAAGAGTGGTACCTGCTGGATCCTGCTCAGAAGATATTATACAGAGACGTGATCCTTGAAAATTATAGCCACCTTGTCTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013592_MULTIEX1-2/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTCGGTGAAAAGTATCAGGT
R:
TCTTCTGAGCAGGATCCAGCA
Band lengths:
135-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development