RnoEX0101752 @ rn6
Exon Skipping
Gene
ENSRNOG00000037251 | Zfp9
Description
zinc finger protein 9 [Source:RGD Symbol;Acc:2293498]
Coordinates
chr4:150488218-150506557:-
Coord C1 exon
chr4:150506168-150506557
Coord A exon
chr4:150505320-150505361
Coord C2 exon
chr4:150488218-150488344
Length
42 bp
Sequences
Splice sites
3' ss Seq
CATTCTTCCTTCTCCCTCAGCTT
3' ss Score
9.4
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGGCGAGCGGGCAAGCCAGGTCCCGAGTGAATGAATTACTGGGACAGAATAACCCACGCAAGACTCGGTTTCCTTTTGTGCGTGCAGAGTGTGACTATTACGAATACTTGCTGCAGTTTTCTTTCTTTTTCTTTTTTAAAGCTGCAACTAGTACTTCTTGCGCAGGGAATACCCTGTGAGGGTCGCAGGGGAGCTCAACCTCGCTGGGGGCCTTTGGATTGGTCCCTAAGGTTCTGTGTTTGGAGCCACCAAGCCTCCAGCCACTCACATACGCGAGATCCCAGTTCTGAATTTGGTACTCGGTCATGGCTTTTGCGTAATGACACAGTATCCTGAAACTATGGAAGACTGTGTGCTCGCCGAAAGTCTGGGACAAGTTTAAGGAGAGAG
Seq A exon
CTTTCCCTCCTCCACTCAGAGCAGAAAATGAACAAATCCCAG
Seq C2 exon
GAGCAAGTGTCATTCAAGGATGTATGCGTGGATTTCACCAAGGAAGAGTGGTATTTGCTGGACCCCGCCCAGAAGGTGCTTTACAGAGATGTGATCCTGGAGAATTATAGCAACTTTGTCTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000037251_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGAAGACTGTGTGCTCGC
R:
CTGTAAAGCACCTTCTGGGCG
Band lengths:
137-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]