HsaEX0073242 @ hg19
Exon Skipping
Gene
ENSG00000198105 | ZNF248
Description
zinc finger protein 248 [Source:HGNC Symbol;Acc:13041]
Coordinates
chr10:38126913-38147034:-
Coord C1 exon
chr10:38146933-38147034
Coord A exon
chr10:38145224-38145265
Coord C2 exon
chr10:38126913-38127039
Length
42 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTTCTAATCCTTCAGCTC
3' ss Score
9.78
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CGCATGTGCATCCCCGCCTCCCGCTCCAGGCGAGTCCTTCCCTGGACTCCAGTCCCTTGTGGGAAACAATCCCTCGCCTCCGGAGGCGGCGAGGAGCGGCGG
Seq A exon
CTCTCCTTCCTCCACTAAGAGCGGAAAATGAACAAATCCCAG
Seq C2 exon
GAACAAGTGTCATTCAAGGATGTATGTGTGGACTTCACTCAGGAAGAGTGGTATCTGCTGGACCCTGCTCAGAAGATTCTATACAGAGATGTGATCCTGGAAAATTATAGCAATCTTGTCTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198105_MULTIEX2-2/5=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGGCGAGTCCTTCCC
R:
GGGTCCAGCAGATACCACTCT
Band lengths:
144-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)