MmuALTA1021464-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000030483 | Cyp2b10
Description
cytochrome P450, family 2, subfamily b, polypeptide 10 [Source:MGI Symbol;Acc:MGI:88598]
Coordinates
chr7:25914748-25915533:+
Coord C1 exon
chr7:25914748-25914924
Coord A exon
chr7:25915392-25915394
Coord C2 exon
chr7:25915395-25915533
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TCTCTTCCATCTGGAACCAGGAG
3' ss Score
7.12
Exon sequences
Seq C1 exon
ATGTTTGAGCTCTTCTCTGGCTTCCTGAAGTACTTTCCTGGTGCCCACAGACAAATCTCCAAAAACCTGCAGGAACTCCTCGACTACATTGGCCATAGTGTGGAGAAGCACAGGGCCACCTTGGACCCCAGTGTTCCACGAGACTTCATTGATATTTACCTTCTGCGCATGGAGAAG
Seq A exon
GAG
Seq C2 exon
AAGTCCAACCAGCACACGGAGTTCCATCACCAGAACCTCATGATGTCTGTGCTCTCTCTCTTCTTTGCTGGCACCGAGACCAGCAGCACCACGCTCCGCTATGGCTTCCTGCTCATGCTCAAGTACCCCCATGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030483-7-8,7-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.4=100)
A:
NA
C2:
PF0006717=p450=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTTGGACCCCAGTGTTC
R:
CTGGTGATGGAACTCCGTGTG
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types