MmuALTA1025565-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000033671 | Cep350
Description
centrosomal protein 350 [Source:MGI Symbol;Acc:MGI:1921331]
Coordinates
chr1:155902587-155906652:-
Coord C1 exon
chr1:155906489-155906652
Coord A exon
chr1:155902763-155902783
Coord C2 exon
chr1:155902587-155902762
Length
21 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
GTTTCTCTCCATTCTATTAGACT
3' ss Score
6.33
Exon sequences
Seq C1 exon
TAGTGGTAGCAGCCGACAGGACAGCCCTTCCGTTCCACCCAGTAAGGAGAATGAGAAGCCATTCCATGGTGAGAAGATGGAGAGCTCAGTTGATGAACAGTTGCAGACAGCCGCAGATGATTCCTTACGAAGTGACAGTATTCCGTCTCTGCCTGATGAGAAAG
Seq A exon
ACTCAACTTCTATTGCAACAG
Seq C2 exon
AATACTCCCTGAAATTTGATGAATCTATGACAGAAGATGAAATAGAAGAAAAGTCATTTCGCTCTCTACTACCTTCTGAGAGTCATCGTAGATTTAACATGGAAAAGAAAAGAGGCCATCATGACGACTCGGATGAGGATGCTTCCCCAGACAAGACTGCTCTGTCTTCTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033671-33-40,33-39-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTCTCTGCCTGATGAGAA
R:
ACTCTCAGAAGGTAGTAGAGAGCG
Band lengths:
106-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types