RnoALTA0008417-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000003882 | Cep350
Description
centrosomal protein 350 [Source:RGD Symbol;Acc:621162]
Coordinates
chr13:73550247-73554492:-
Coord C1 exon
chr13:73554326-73554492
Coord A exon
chr13:73550423-73550443
Coord C2 exon
chr13:73550247-73550422
Length
21 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
GATTTTCTCCATTCTGTTAGATT
3' ss Score
6.39
Exon sequences
Seq C1 exon
TAGTAGTGGTAGCAGCCGACAGGAAAGCCCTTCAGTTCCACCTAGTAAGGAAAATGAGAAGAAATTTCATGGTGAGAAGATGGAGACTTCAATTGATGAACAACTTCAGACGGCTGCAGATGATTCTCTACGAAGTGATAGTATTCCGTCTCTTCCTGACGAGAAAG
Seq A exon
ATTCAACTTCTATTGCAACAG
Seq C2 exon
AATACTCCCTGAAATTTGATGAATCTATGACAGAAGATGAAATAGAAGAAAAGTCTTTTCGATCTTTACTACCTTCTGAGAGTCATCGCAGATTTAACATGGAAAAGAAAAGAGGCCATCATGACGACTCTGATGAAGATGCTTCCCCAGACAAGACTACACTGTGTTCTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003882-31-39,31-38-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAACTTCAGACGGCTGCA
R:
TGTCATAGATTCATCAAATTTCAGGG
Band lengths:
102-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]