MmuALTA1025773-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000033860 | Fgg
Description
fibrinogen gamma chain [Source:MGI Symbol;Acc:MGI:95526]
Coordinates
chr3:83008648-83010194:+
Coord C1 exon
chr3:83008648-83008741
Coord A exon
chr3:83010064-83010073
Coord C2 exon
chr3:83010074-83010194
Length
10 bp
Sequences
Splice sites
5' ss Seq
TCGGTATGT
5' ss Score
9.22
3' ss Seq
CTGCATTGCTCTGTTTCTAGGTA
3' ss Score
9.13
Exon sequences
Seq C1 exon
GTATGATAGACAGTGCCACTCAGAAGTCTAAGAAGATGGTAGAAGAAATTGTGAAATACGAAGCGCTGCTGTTAACCCACGAGACAAGCATTCG
Seq A exon
GTATTTACAG
Seq C2 exon
GAAATCTATAATTCAAATAACCAGAAGATCACAAACCTAAAACAGAAGGTAGCCCAGCTTGAAGCCCAGTGCCAGGAGCCTTGCAAGGACTCTGTGCAAATCCATGACACAACTGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033860-4-6,4-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=FE(21.4=100)
A:
NA
C2:
PF087025=Fib_alpha=PD(26.9=86.7),PF0014713=Fibrinogen_C=PU(1.2=6.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATACGAAGCGCTGCTGT
R:
TCAAGCTGGGCTACCTTCTGT
Band lengths:
105-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types