GgaALTA1013580-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009268 | FGG
Description
fibrinogen, gamma chain precursor [Source:RefSeq peptide;Acc:NP_990320]
Coordinates
chr4:19808658-19809821:-
Coord C1 exon
chr4:19809728-19809821
Coord A exon
chr4:19808785-19808788
Coord C2 exon
chr4:19808658-19808784
Length
4 bp
Sequences
Splice sites
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
3' ss Seq
TTTTATGTCTCTCTCTCCAGACA
3' ss Score
11.67
Exon sequences
Seq C1 exon
AATCTATTGAGCAATTGACTCAGAAGTCCAAGAAAATAATTGAAGAAATTATCAGATATGAAAACACTATTTTGGCTCATGAAAATACTATACA
Seq A exon
ACAG
Seq C2 exon
TTGACAGATATGCATATAATGAACAGCAACAAGATCACACAACTGAAACAGAAGATTGCTCAGCTTGAGTCACACTGCCAGGAACCATGCAAAGATACTGCTGAAATACAGGAGACAACTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009268-6-5,6-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.289
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=FE(21.4=100),PF061607=EzrA=FE(27.0=100),PF083176=Spc7=FE(23.8=100),PF123293=TMF_DNA_bd=PU(50.8=96.9)
A:
NA
C2:
PF087025=Fib_alpha=PD(26.9=86.7),PF061607=EzrA=PD(27.0=68.9),PF083176=Spc7=FE(33.8=100),PF123293=TMF_DNA_bd=PD(47.5=64.4),PF0014713=Fibrinogen_C=PU(1.2=6.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAACACTATTTTGGCTCATGA
R:
AGCTGAGCAATCTTCTGTTTCAGT
Band lengths:
101-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]