GgaALTA1013580-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009268 | FGG
Description
fibrinogen, gamma chain precursor [Source:RefSeq peptide;Acc:NP_990320]
Coordinates
chr4:19808658-19809821:-
Coord C1 exon
chr4:19809728-19809821
Coord A exon
NA
Coord C2 exon
chr4:19808658-19808784
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
3' ss Seq
ATGTCTCTCTCTCCAGACAGTTG
3' ss Score
7.09
Exon sequences
Seq C1 exon
AATCTATTGAGCAATTGACTCAGAAGTCCAAGAAAATAATTGAAGAAATTATCAGATATGAAAACACTATTTTGGCTCATGAAAATACTATACA
Seq A exon
NA
Seq C2 exon
TTGACAGATATGCATATAATGAACAGCAACAAGATCACACAACTGAAACAGAAGATTGCTCAGCTTGAGTCACACTGCCAGGAACCATGCAAAGATACTGCTGAAATACAGGAGACAACTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009268-6-5,6-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.289
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=FE(21.4=100),PF061607=EzrA=FE(27.0=100),PF083176=Spc7=FE(23.8=100),PF123293=TMF_DNA_bd=PU(50.8=96.9)
A:
NA
C2:
PF087025=Fib_alpha=PD(26.9=86.7),PF061607=EzrA=PD(27.0=68.9),PF083176=Spc7=FE(33.8=100),PF123293=TMF_DNA_bd=PD(47.5=64.4),PF0014713=Fibrinogen_C=PU(1.2=6.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAACACTATTTTGGCTCATGA
R:
AGCTGAGCAATCTTCTGTTTCAGT
Band lengths:
101-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]