GgaALTD1009840-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000009268 | FGG
Description
fibrinogen, gamma chain precursor [Source:RefSeq peptide;Acc:NP_990320]
Coordinates
chr4:19808658-19809821:-
Coord C1 exon
chr4:19809728-19809821
Coord A exon
chr4:19809724-19809727
Coord C2 exon
chr4:19808658-19808788
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTATCT
5' ss Score
4.28
3' ss Seq
TTTTATGTCTCTCTCTCCAGACA
3' ss Score
11.67
Exon sequences
Seq C1 exon
AATCTATTGAGCAATTGACTCAGAAGTCCAAGAAAATAATTGAAGAAATTATCAGATATGAAAACACTATTTTGGCTCATGAAAATACTATACA
Seq A exon
GTAG
Seq C2 exon
ACAGTTGACAGATATGCATATAATGAACAGCAACAAGATCACACAACTGAAACAGAAGATTGCTCAGCTTGAGTCACACTGCCAGGAACCATGCAAAGATACTGCTGAAATACAGGAGACAACTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009268-6-4,7-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.289
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=FE(21.4=100),PF061607=EzrA=FE(27.0=100),PF083176=Spc7=FE(23.8=100),PF123293=TMF_DNA_bd=PU(50.8=96.9)
A:
NA
C2:
PF087025=Fib_alpha=PD(26.9=86.7),PF061607=EzrA=PD(27.0=68.9),PF083176=Spc7=FE(33.8=100),PF123293=TMF_DNA_bd=PD(47.5=64.4),PF0014713=Fibrinogen_C=PU(1.2=6.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAACACTATTTTGGCTCATGA
R:
AGCTGAGCAATCTTCTGTTTCAGT
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]