MmuALTA1026315-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000034402 | Kcnh5
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5 [Source:MGI Symbol;Acc:MGI:3584508]
Coordinates
chr12:74914603-75137750:-
Coord C1 exon
chr12:75137644-75137750
Coord A exon
chr12:74914644-74914646
Coord C2 exon
chr12:74914603-74914643
Length
3 bp
Sequences
Splice sites
5' ss Seq
ACCGTAGGT
5' ss Score
6.05
3' ss Seq
CTTTATTCTTTACTTTCAAGGAG
3' ss Score
7.37
Exon sequences
Seq C1 exon
TTTTATGTATGGAGAACTGACCGACAAGAAGACCATTGAGAAAGTCAGGCAGACTTTTGACAACTACGAGTCAAACTGTTTTGAAGTTCTTCTGTACAAAAAAAACC
Seq A exon
GAG
Seq C2 exon
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034402-3-12,3-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=FE(32.7=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSMUST00000042299fB11785
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types