MmuEX1015628 @ mm10
Exon Skipping
Gene
ENSMUSG00000034402 | Kcnh5
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5 [Source:MGI Symbol;Acc:MGI:3584508]
Coordinates
chr12:74897217-74965321:-
Coord C1 exon
chr12:74965125-74965321
Coord A exon
chr12:74914603-74914643
Coord C2 exon
chr12:74897217-74898454
Length
41 bp
Sequences
Splice sites
3' ss Seq
TATTCTTTACTTTCAAGGAGGTT
3' ss Score
-11.24
5' ss Seq
TTTGTAAAA
5' ss Score
-6.62
Exon sequences
Seq C1 exon
GGAAAGGTGACGTGTTTGGAGACATCTTCTGGAAGGAAACCACCCTTGCTCATGCGTGTGCCAATGTCCGGGCCCTGACTTACTGTGATCTGCACATCATCAAGCGAGAAGCCTTGCTCAAGGTCCTTGACTTCTATACAGCATTTGCAAACTCATTTTCCAGGAACCTCACTCTCACTTGCAATCTAAGGAAGCGG
Seq A exon
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Seq C2 exon
ATCATCTTCCGTAAAATTAGTGATGTGAAGAAGGAGGAGGAGGAGCGGCTGCGGCAGAAGAATGAGGTGACTCTGAGCATCCCCGTGGACCACCCAGTGAGGAAGCTCTTCCAGAAGTTCAAACAGCAGAAAGAACTGAGGATCCAGGGCTCTGCACAGAGTGATCCTGAGAGGAGCCAGCTTCAGGTAGAGAGCCGCCCTTTGCAGAACGGAGCCTCCATCACAGGTACCAGTGTGGTCACCGTATCACAGATTACCCCCATCCAGACGTCTCTGGCGTATGTGAAAACCAGCGAGTCTCTTAAGCAGAACAACCGCGATGCCATGGAACTGAAGCCCAATGGTGGCGCTGAACCCAAATGTCTCAAGGTCAACAGCCCCATCAGGATGAAAAACGGAAATGGGAAGGGGTGGCTGAGACTCAAGAACAACATGGGGGCTCAGGAGGAGAAAAAGGAAGACTGGAATAATGTCACCAAAGCCGAGTCGATGGGGCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034402-'12-13,'12-12,13-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.639
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=71.2)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000042299fB11785
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCTCACTCTCACTTGCA
R:
GAAGAGCTTCCTCACTGGGTG
Band lengths:
146-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types