MmuALTA1026895-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:81233155-81237553:+
Coord C1 exon
chr10:81233155-81233242
Coord A exon
NA
Coord C2 exon
chr10:81237389-81237553
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
CTCCGCTTTCCCCCTCCCAGCTA
3' ss Score
8.61
Exon sequences
Seq C1 exon
GACGTCACTCCCGTGGGCTCCGGGAGGACGTGGACATGGCGGCTAGCAGCTCTTCCGGCCTCGCGCAGGGCACCAACCCGTCGTCCAG
Seq A exon
NA
Seq C2 exon
CTACTGGGGCCAGCTACACTGTGCAGTTTACCCCCAAAATGGAGAGCACCGCCAGCCTGGCCCTGGCCCCCGCGAGCCAGCTGCCTGCGCCTGGAGGAGGAGTTGCGGTGGGGTATAGCTGCTCCCAGCCCCAAGCCAGCCAGGGCCCCACATCCAGCAGCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949-0-4,0-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.883
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTCCCGTGGGCTCC
R:
TTGGGGGTAAACTGCACAGTG
Band lengths:
122-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types