RnoALTA0045888-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000020416 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:RGD Symbol;Acc:1304737]
Coordinates
chr7:11349034-11353713:-
Coord C1 exon
chr7:11353642-11353713
Coord A exon
chr7:11349200-11349236
Coord C2 exon
chr7:11349034-11349199
Length
37 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
CTCCACTCTCTCCCTCCCAGCCA
3' ss Score
7.42
Exon sequences
Seq C1 exon
GCTCCGGGAGGACGCGGACATGGCGGCTAGCAGCTCTTCCGGCCTCGCGCAGGGCGCCAGCCCGTCGTCCAG
Seq A exon
CCACTGGGGCCAGCTACACTGTGCCGTCTACCCCCAG
Seq C2 exon
GATGAAGAGCACTGTCAGCCTGGCCCTGGCACCTACCAGCCAGCCGCCTGCACCTAGAGGAGGAGTCACAGTGGGGTACAGCTGCTCCCAGCCCCACCCCAGCCAGGGCCCCACATCCAACAGCCGGTCCCGGGGTCCTGTGCCTACCACAGCATCCACCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020416-1-2,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGCAGCTCTTCCGGCCTC
R:
GACTCCTCCTCTAGGTGCAGG
Band lengths:
113-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]