RnoINT0168811 @ rn6
Intron Retention
Gene
ENSRNOG00000020416 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:RGD Symbol;Acc:1304737]
Coordinates
chr7:11349034-11353713:-
Coord C1 exon
chr7:11353642-11353713
Coord A exon
chr7:11349200-11353641
Coord C2 exon
chr7:11349034-11349199
Length
4442 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
ACTGTGCCGTCTACCCCCAGGAT
3' ss Score
10.86
Exon sequences
Seq C1 exon
GCTCCGGGAGGACGCGGACATGGCGGCTAGCAGCTCTTCCGGCCTCGCGCAGGGCGCCAGCCCGTCGTCCAG
Seq A exon
GTAACGAGCCCCGTGGGCGGCGAGGCGCCCCAACCCCGCGGGACTGGGTCGTGAGTCACGGGGAGCGGGGCGGGCCCGAGGCGGGGCGACGGTCCCTGGGGTCCGCGGGAGGGCGGGGCGGGGAGTCCGGGGAATGACAGACTGGGTGGGGGCGGGGACCCCTAGGGGGACGGGGCCAGCCTAGGAGGGACCGACCTGGGAGGGGAGGTTGGGATCCTAGGATGGAGGCCAGAGCTGGAGGAGGGGACTGACCTCAGAGAGGACCTGAGACCTTGGGGAACCTTTCAAGCGGGAATAGGGTGGGGTGTCGTGGTCCCTGATGGATAGAATTGAAATTTCTGGTGCCTGATGTATGGGGGGGTCCTCCAGGCAGGGATGGAGTCAGGAGTTTTGGTATCTAATAGATGGAGGACCCTCGAGACGGGGATGGAGTCTGGGGTTCTGGTGTCTAATGGATGGGAGACCCTCCAGATGGATATGAATTGGGGGTTGTAGTTTCTGATGAATGGGGGACCCTCCAGGTGAGTATGGATTGGGGGTTCTGGCCTCTGATGGGTTACCCTCCAGATGGGGATGAATTGGGGTTTTAGTCCCTGACGGATGGGGGACTCTCCAGACAGGGATGGGGTCTGGGGTTCTGTGTCTAATGGATGGGGGGGCCTAGCCAGGCAGGGTGAAGGGAGGCTCTGGTCTTTGGACACAGTAAAGACACAGGCCTCCAGTTCAATCTCTGAGGAGAGAAGCAAGGCAGTGTGTGTGTCTGAGTTCAAGGCTAGCCTGAGCTACAGTGAGTATGAGGCCAGGCTGAGTGAGTTAAGGAGACTAAATGGACAATGAATGAAGGCACCAAATTGTGAGGAAAAGGAGTTTGGATGTGTGAGGAGTGGGGACTGACAGCTGGGGACATGTCCTCCTCAGTAGGTGTCTTGGTTAGGGGTGGTGTTGCAGTAATAACATAGGGCCAAGAGCTGGTGAGGGGGTCACTGTGGGGACCAGAGTTCCTGGCCTGAGAGTCAGGCAAGTTCACCGCCATGGCACAACATACAGAAATATACAGATGTTAGAAAGAAAGAAGGAATGAAAACACTCCAATCAACAGCAAGTTGGGGAGGAAAGGGTTGGTTTAACTCTCAGATCGCCAGGACAGGAACTTGCAGGGAGGAACCTGGAGGCGGGAGCTGACACAGAGGCTCCTGACGGAGGTGCTGCTCACTGGCTCACCCAGCCTGCTTTCCTATAGAACCCAGGACCACAGCCCAGGGACGGCCCCACACAGTGGGCTGGGCCCTCCCCCACTGATCACTGATTAAGAAAATGCCCTGGGGTTGGGGATTTAGCTCAGTGGTAGAGCACTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAGAAAAAAAAAAAAAAAAAAGAAAAAAAAGAAAACACCCTACGGGTTTGCCTGCCGCAGATCTTACGGAGATGTTTTCTCACGTGGGTTCCCTCCTCTCAGATGACTTTAGCTTGTGTCCGGTTGATAAAACCGTTCAGCACAATTGGCCTTTGTCAATCGACACCCCAGTAACAGCACTATTTAGTAATAACTTCAGTCTACCAGACATCAATAAACACCAATACCACAATACAAAACATACTTCAGACTTCTCTACAAATCAGTTTAGGATTCGGTCTCTTTGGAGCTGGAGCAATGCCCAGTGGTTAGAGCACCAGTTGTCATTTCGGAGGACCTGGGTTCGATACCCAGCACCCCCCTGACTGCTCACAACCATCTGTGACTCCAAGGGACCCAACACCCCCTTCTGGCCTCTGCAGGCACCAGGCACACATGCGGTGCACAGACAGACATGTAGGCAAAGAAACTACACACAAAAAGTAAAAAAAAAAAAAAAAAAATCTCTGTAAAACTCCAAAATCTCTTCAAAATTTCCAAGTCTCTCAACTGTAGGCTCCTGTAAAAAATCAAATAAATATGTATTTTTATTTTATTTTTTTTCTTTTTTTCAATATGTATTTTTAAAGTAAATATTTTCTTATTCCAAGAACCAAGACATGGTCAAAAGTGGAGCAAGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGTGTTTGCCTAGCAAGTGCAAGGTCCTGGGTTTGGTCCCCAGCTCCAGAAAAAAAAGAAAAAAGAAAAAAAAAAGTGGAGCAAGGCCGAAGCAATCCCAGCAATGTAGACAACTCAGAATCCCACATCTGGGATCCTGTGGGATCCTCTGGGGCTCCGGCCCCTGTAGCACACTCACCTTGTCTTCTAAGCTCTGCCTGACTCCACTCCACCACCATTGCTGCTAGTCTTGGTGGTCGTCCCATGGGACTGGTATCTCCCAAACACTATGGTTTCTGTGTGTAACGGGGCTGCACTGTCGCCCAGAGTCTCTCATAGGATCCCTTAACTTCTCCACATGACCCCTTCATTCCATGGCCGCCAACTGCCACCGAGGCTGCACTTTGACCAGTGGCCTTTCCTGGCCTCTCACGGTGCCAAGTCTCAGCTGCTCTCCATGACCCATTCATGCCTTCAAATCCAGGGCCACCGGGGTGACCCTGACTAAGTTCAGCTGCCAGCCCCAGGTACAGCCTTGGCTACCTTTGGAACACAGCTATGTGCTGGCTCTCAGGAAGCACTTCCCAGAAGCCTTCTTCTCATTTCTTCTCTAGCTGACCAGAACCACAGACCCTTAGTTCAGAATTGCATATGGCCCCCATGCAATCTTCACTCCCTCTGAACCTCACAGACCTGGCTTCCACCAGGCACCCTGCATCCTGTGGGAGAGCATCCCGCTAATTCTCTCTACGGCTCACTAAGCTGGGAGTGCTCTATGGCTTCTCAGTCCTCCATAGAACATGGTGATGTCTGTCTCATTGAATCCTCACGAGCCTGGCACCAGTCTGTCTTAGACGGGTTACTATCGCCATGGTGAAGCCCCATGGCCAAAAGAAGTTAGGGCGCAAAATGGTCAGCTCAGCTCAGCTCAGCATGGTTTCACACCACTGCCCCTGTTGAAAACAGGCAGGAGCTGAGGCAGAGGCTGTGGAGGGTGCTGCTTACTGGCTTGCGCTGGCTGCATGGCTTGCTCAGCCTGCTTATAGAACTCAAGATCACCAGCCCAGGGATAGCGCCAGCCACAATGGGTTGAGCCCTCCCCCATTAAACACTAGTTATGAAAATGCCTTACCAGTCTGCATACAGCCTGATCTCATGGAAACCTTTTCTCAATTGAGGCTCCCTTTGTGATGACTTTAGCCTGGGTTGACTTGACACAAAGCTACTCAGGGAAACGTGTCCGCTTCCTGTCCCTTGGAGCCGCTCCAGAGGCCTCTGCCCGTCACCAAGACCACAACCCCATCATGCGGCAGCCCAGCCTTCCAGGTTCCGCCTGGCACCCCTCTGGCAGCTTCTGATTTAGGTCCAGTTTTTGAGGTCTGGATGTGCTCGCCATGGTGTATCTCTCAGGATCCCCGTGGACAAATGCCTGGGAACCCTCAGCTGTGATGCCAGTTTTCACAGACATAGGGATCTCACAGTGTCACACAGCTTTGACGTCTCCTGCTCCCACCTAGATTCTCCGATAGGTTTCTGGTAGCCAGGGGTTTACTAAGCTGCCGCCGAGGCCACTCCCAGTAGGTAGTACTGAGCATGCGTGTGGGTTTGGGTCGGGTTCTTAGCGCCACGAGAACCCTCAAACAGAATCACATCCCTAGCCTCCCCGAGGGATTCCGTGGCACAGACAGCTATAACTGGTGGCTGTTGGTGCCATCTTCCCAGCAATCGGGGCAGTAGTGGGACCCTGCCTAAAATGAGTGTCTGGAGAGATGGTTGGGGTTAGGGCAGGGCCCCACTTGTGGAGGGTGCAGGGCAGGGGTGATTCACTGTCTCTGGCTTCAGAGCCTGGAGCCCTCTGCTGGCCTCAGCACCAGTCACACAAACGATGCCAGCAAATCAGCCACATTCACAAAATAGAAATATCCCTGGGGTAACAGGCAGCCCACACCCGGTTGGTTGCAAGTGCCCTCAACTGCTTGGGTTTCTCGGGCTGTGACTGGATATCAAGCCATACCGGAGAGACAACACTGCAGTTGGTGTAAGTTCGCGGTGCATCAGTGTGAAGACCCAGGTTCGAACCCCCAGCATCCACATAAAATATCGTGATGGTGACACACACCTATGCCCCGGATGCTGGAGGGACCAACACAAGAGGACCCGGGGCTTGCTGACCAGATCACCTAGTTAGTGCTCATACAGTTAGGACAGTGATTCTGCGCTGGCCCCGTAGCAAGTGAGGGGCTGGCCTGGCCAAGAACCTGCTCTGGGAGTCACATACTGAGGACACCCAGCCCTCCTCCACTCTCTCCCTCCCAGCCACTGGGGCCAGCTACACTGTGCCGTCTACCCCCAG
Seq C2 exon
GATGAAGAGCACTGTCAGCCTGGCCCTGGCACCTACCAGCCAGCCGCCTGCACCTAGAGGAGGAGTCACAGTGGGGTACAGCTGCTCCCAGCCCCACCCCAGCCAGGGCCCCACATCCAACAGCCGGTCCCGGGGTCCTGTGCCTACCACAGCATCCACCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020416:ENSRNOT00000061132:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]