RnoEX0101820 @ rn6
Exon Skipping
Gene
ENSRNOG00000020416 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:RGD Symbol;Acc:1304737]
Coordinates
chr7:11347187-11353713:-
Coord C1 exon
chr7:11353642-11353713
Coord A exon
chr7:11349034-11349199
Coord C2 exon
chr7:11347187-11347271
Length
166 bp
Sequences
Splice sites
3' ss Seq
ACTGTGCCGTCTACCCCCAGGAT
3' ss Score
10.86
5' ss Seq
CAGGTACTA
5' ss Score
7.64
Exon sequences
Seq C1 exon
GCTCCGGGAGGACGCGGACATGGCGGCTAGCAGCTCTTCCGGCCTCGCGCAGGGCGCCAGCCCGTCGTCCAG
Seq A exon
GATGAAGAGCACTGTCAGCCTGGCCCTGGCACCTACCAGCCAGCCGCCTGCACCTAGAGGAGGAGTCACAGTGGGGTACAGCTGCTCCCAGCCCCACCCCAGCCAGGGCCCCACATCCAACAGCCGGTCCCGGGGTCCTGTGCCTACCACAGCATCCACCCACCAG
Seq C2 exon
GAGGATGGTCACAGCTGCCGAGAGAAGGCGACCAAGAGCCGCACAGACTCACGGGAGCGGCCAGCCAGGTCGCTCTCCCGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020416_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGACGCGGACATGG
R:
GGGAGAGCGACCTGGCTG
Band lengths:
146-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]