HsaEX6091907 @ hg19
Exon Skipping
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:29189]
Coordinates
chr19:3833662-3869027:-
Coord C1 exon
chr19:3868963-3869027
Coord A exon
chr19:3834771-3834981
Coord C2 exon
chr19:3833662-3833776
Length
211 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTTTGTGGTTCTAGCGC
3' ss Score
8.32
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
GAAGACGCCAAGATGGCGACGAGTCAGTATTTCGACTTCGCGCAGGGCGGCGGCCCGCAGTACAG
Seq A exon
CGCCCAGCCTCCGACCCTTCCCCTGCCCACTGTGGGGGCCAGCTATACTGCACAACCCACTCCTGGGATGGACCCTGCCGTGAACCCGGCCTTTCCCCCAGCTGCCCCGGCAGGGTACGGTGGATACCAGCCCCACTCCGGCCAGGACTTCGCCTACGGCAGCCGACCCCAGGAGCCCGTCCCCACGGCCACCACCATGGCTACCTACCAG
Seq C2 exon
GACAGTTACAGCTACGGACAGTCAGCAGCTGCCAGGAGCTATGAGGACAGGCCGTACTTCCAGTCTGCTGCCCTCCAGTCTGGGCGCATGACAGCCGCAGACTCCGGCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-'0-4,'0-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=1.000 C2=0.906
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGATGGCGACGAGTCAGTA
R:
CTGGCTGGCCGGAGTCTG
Band lengths:
172-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)