MmuEX0053767 @ mm10
Exon Skipping
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:81233155-81239514:+
Coord C1 exon
chr10:81233155-81233242
Coord A exon
chr10:81237357-81237591
Coord C2 exon
chr10:81239430-81239514
Length
235 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTCTGCTGGCTCTAGCAC
3' ss Score
6.4
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GACGTCACTCCCGTGGGCTCCGGGAGGACGTGGACATGGCGGCTAGCAGCTCTTCCGGCCTCGCGCAGGGCACCAACCCGTCGTCCAG
Seq A exon
CACCCAGTCGTCCTCCGCTTTCCCCCTCCCAGCTACTGGGGCCAGCTACACTGTGCAGTTTACCCCCAAAATGGAGAGCACCGCCAGCCTGGCCCTGGCCCCCGCGAGCCAGCTGCCTGCGCCTGGAGGAGGAGTTGCGGTGGGGTATAGCTGCTCCCAGCCCCAAGCCAGCCAGGGCCCCACATCCAGCAGCCAGCCCCGGGGTCCTGTGCCTACCTCTGCATCCGCCCACCAG
Seq C2 exon
GAGGATGGTCACAGCTACCGAGAGAAGGTGACCAAGAGCCGCACAGACTCACGGGAGCGGCCAGCCAGGTCGCTCTGCAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949-'0-6,'0-3,6-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.944 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTCCCGTGGGCTCC
R:
TGCAGAGCGACCTGGCTG
Band lengths:
164-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types