DreEX0086427 @ danRer10
Exon Skipping
Gene
ENSDARG00000027109 | zfr
Description
zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]
Coordinates
chr5:40538169-40542343:-
Coord C1 exon
chr5:40542262-40542343
Coord A exon
chr5:40538504-40538786
Coord C2 exon
chr5:40538169-40538313
Length
283 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCCTGTCTCCTGCAGTCA
3' ss Score
10.91
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TGCCCAGCCGGCTAGGTGAAGATGCCAAAATGGCCACCGGCAACTACTTTGGATTTACCCATGGTGCTGGGGCCCAGTACAG
Seq A exon
TCAACAGCCGGCCGCTGGGGTTGCATACACCCACCCCACTACAGTGGCCAGCTATACTGTACATCAAGCACCTGTGGCAGCGCACACAGTGGCAGCAGCCTATGCCCCTACAGCCGCCACGGTTGCTGTTGCAAGGCCTGCGCCAGTCGCTGTAGCGGCTGCGGCTAATGCTGCAGCTTTTGGGGGATATCAACCAGCCCATGCTGCCACGGATTATGGATATGCTCAGAGACAGCCAGAAGTACCCCCACCACCACCTCCAGTCACCTCACAAAACTACCAG
Seq C2 exon
GACTCTTATTCGTATGTGCGGTCCACCGCTCCTGCTGTAGCGTATGACAGTAAACAATATTACCAACAACCTGCAGCTACTCCAGCTGTGGCTGCTGCAGCAGCCCAACCACAACCCACTGTTGCTGAATCCTACTATCAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027109-'2-6,'2-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.293 C2=0.204
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCGGCTAGGTGAAGAT
R:
CTGATAGTAGGATTCAGCAACAGTGG
Band lengths:
220-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]