RnoEX0101795 @ rn6
Exon Skipping
Gene
ENSRNOG00000011627 | Zfr
Description
zinc finger RNA binding protein [Source:RGD Symbol;Acc:1311890]
Coordinates
chr2:62150819-62171652:+
Coord C1 exon
chr2:62150819-62150918
Coord A exon
chr2:62170402-62170684
Coord C2 exon
chr2:62171508-62171652
Length
283 bp
Sequences
Splice sites
3' ss Seq
TCTTCTACTTCACAATATAGCCA
3' ss Score
4.29
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TGCCCAGCCGGCTGGGGGAAGATGCCAAAATGGCGACCGGCAACTACTTTGGATTCACCCACAGCGGGGCGGCGGCGGCGGCGGCTGCGGCCCAGTATAG
Seq A exon
CCAGCAGCCAGCTTCGGGTGTAGCCTATTCCCATCCAACTACTGTTGCTAGCTACACTGTCCATCAGGCTCCAGTAGCTGCTCACACAGTTACTGCTGCTTACGCACCAGCAGCCGCCACAGTTGCAGTTGCCAGGCCTGCTCCAGTTGCTGTTGCAGCTGCTGCAACAGCTGCTGCTTATGGAGGCTACCCCACTGCACACACAGCAACCGACTATGGTTACACCCAGAGGCAACAAGAAGCACCACCACCACCACCCCCAGCTACTACACAGAACTACCAG
Seq C2 exon
GACTCATACTCGTATGTAAGATCCACAGCCCCTGCTGTGGCTTATGATAGTAAGCAGTACTACCAACAGCCCACAGCAACTGCTGCTGCAGTGGCTGCTGCTGCCCAGCCTCAGCCTTCGGTTGCTGAAACCTACTATCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011627-'2-5,'2-3,8-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.266 C2=0.163
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGGGGAAGATGCCAAA
R:
CTGTCTGATAGTAGGTTTCAGCA
Band lengths:
236-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]