MmuEX0053754 @ mm10
Exon Skipping
Gene
ENSMUSG00000022201 | Zfr
Description
zinc finger RNA binding protein [Source:MGI Symbol;Acc:MGI:1341890]
Coordinates
chr15:12118239-12138049:+
Coord C1 exon
chr15:12118239-12118338
Coord A exon
chr15:12136396-12136678
Coord C2 exon
chr15:12137905-12138049
Length
283 bp
Sequences
Splice sites
3' ss Seq
TCTTCTACTTCACACTATAGCCA
3' ss Score
4.81
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TGCCCAGCCGGCTGGGGGAAGATGCCAAAATGGCGACCGGCAACTACTTTGGATTCACCCACAGCGGGGCGGCGGCGGCGGCGGCTGCGGCCCAGTATAG
Seq A exon
CCAGCAGCCAGCTTCGGGTGTAGCCTATTCCCATCCAACTACAGTTGCTAGCTACACTGTCCATCAGGCTCCAGTAGCTGCTCACACAGTTACTGCTGCTTACGCACCAGCAGCCGCCACAGTTGCAGTTGCCAGGCCTGCTCCAGTTGCTGTTGCAGCTGCTGCAACAGCTGCTGCATATGGAGGCTACCCCACTGCACACACAGCAACCGACTATGGTTACACCCAGAGGCAACAAGAAGCACCACCACCACCACCCCCAGCTACTACACAGAACTACCAG
Seq C2 exon
GACTCATATTCGTATGTAAGATCCACAGCCCCTGCTGTAGCTTATGATAGTAAGCAGTACTACCAACAGCCAACAGCAACTGCTGCTGCTGTAGCTGCTGCTGCCCAGCCTCAGCCTTCTGTTGCTGAAACCTACTATCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022201-'3-12,'3-11,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.266 C2=0.177
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000122941fB20070
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGGGGAAGATGCCAAA
R:
CTGTCTGATAGTAGGTTTCAGCAACA
Band lengths:
236-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types