MmuEX0053754 @ mm9
Exon Skipping
Gene
ENSMUSG00000022201 | Zfr
Description
zinc finger RNA binding protein [Source:MGI Symbol;Acc:MGI:1341890]
Coordinates
chr15:12047994-12067804:+
Coord C1 exon
chr15:12047994-12048093
Coord A exon
chr15:12066151-12066433
Coord C2 exon
chr15:12067660-12067804
Length
283 bp
Sequences
Splice sites
3' ss Seq
TCTTCTACTTCACACTATAGCCA
3' ss Score
4.81
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TGCCCAGCCGGCTGGGGGAAGATGCCAAAATGGCGACCGGCAACTACTTTGGATTCACCCACAGCGGGGCGGCGGCGGCGGCGGCTGCGGCCCAGTATAG
Seq A exon
CCAGCAGCCAGCTTCGGGTGTAGCCTATTCCCATCCAACTACAGTTGCTAGCTACACTGTCCATCAGGCTCCAGTAGCTGCTCACACAGTTACTGCTGCTTACGCACCAGCAGCCGCCACAGTTGCAGTTGCCAGGCCTGCTCCAGTTGCTGTTGCAGCTGCTGCAACAGCTGCTGCATATGGAGGCTACCCCACTGCACACACAGCAACCGACTATGGTTACACCCAGAGGCAACAAGAAGCACCACCACCACCACCCCCAGCTACTACACAGAACTACCAG
Seq C2 exon
GACTCATATTCGTATGTAAGATCCACAGCCCCTGCTGTAGCTTATGATAGTAAGCAGTACTACCAACAGCCAACAGCAACTGCTGCTGCTGTAGCTGCTGCTGCCCAGCCTCAGCCTTCTGTTGCTGAAACCTACTATCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022201-'2-5,'2-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.261 C2=0.177
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGGGGAAGATGCCAAA
R:
CTGTCTGATAGTAGGTTTCAGCAACA
Band lengths:
236-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: