MmuALTA1027259-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24347199-24351029:-
Coord C1 exon
chr17:24350968-24351029
Coord A exon
chr17:24347267-24347285
Coord C2 exon
chr17:24347199-24347266
Length
19 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
TCAGTTTGTTTCCTAACTAGTGT
3' ss Score
5.99
Exon sequences
Seq C1 exon
GGTGAGTGAGGCGCAGCCCTCCCCGGATTCCGGGCTGCGGACCAGACCTGCCTAGCCTTAAG
Seq A exon
TGTTGAGCTTCTTCTTCAG
Seq C2 exon
CTGGGAAAAGAAAAATGGAGGTGTTGAAGAAATTAAAACTCCTTCTCTGGAAGAATTTCATCTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435-1-3,1-2,1-1-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCTCCCCGGATTCC
R:
TGAAATTCTTCCAGAGAAGGAGT
Band lengths:
109-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types