Special

ENSMUSG00000035435 @ mm10

Biotype
protein_coding
Gene Symbol
Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24264259-24351029:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
35.01
86.27
0
Alternative 3'ss
21
chr17:24300426-24300446
-
64.99
86.27
0
Alternative 3'ss
19
chr17:24347267-24347285
-
61.76
14.97
0
Alternative 3'ss
35
chr17:24347267-24347301
-
30.87
23.87
0
Alternative 3'ss
0
NA
-
20.95
25.67
0
Alternative 3'ss
73
chr17:24321075-24321147
-
77.78
25.62
0
Alternative 3'ss
0
NA
-
86.81
40.01
0
Alternative 3'ss
112
chr17:24318329-24318440
-
13.19
40.01
0
Alternative 3'ss
0
NA
-
17.54
100
0
Alternative 3'ss
118
chr17:24265496-24265613
-
82.09
100
0
Exon Skipping
121
chr17:24337710-24337830
-
10.23
35.25
0
Exon Skipping
128
chr17:24335535-24335662
-
94.55
45.56
0
Exon Skipping
191
chr17:24265423-24265613
-
75.73
95.22
0
Exon Skipping
188
chr17:24267550-24267737
-
79.68
65.04
0
Exon Skipping
163
chr17:24295085-24295247
-
85.33
59.32
0
Exon Skipping
117
chr17:24327639-24327755
-
84.03
50.28
0
Exon Skipping
227
chr17:24303392-24303618
-
15.04
50.93
0
Exon Skipping
107
chr17:24300835-24300941
-
11.56
25
0
Exon Skipping
126
chr17:24317114-24317239
-
90.59
39.65
0
Exon Skipping
274
chr17:24289336-24289609
-
84.35
100
0
Exon Skipping
159
chr17:24285616-24285774
-
86.53
100
0
Intron Retention
6999
chr17:24300447-24307445
-
26.62
62.23
0
Intron Retention
916
chr17:24317240-24318155
-
13.76
27.23
0
Intron Retention
3682
chr17:24347286-24350967
-
40.17
40
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Rat rn6 ENSRNOG00000039656 Abca17 1-to-1
Chicken galGal4 ENSGALG00000001967 ABCA3 5-to-1
Chicken galGal3 ENSGALG00000001967 E1BVQ5_CHICK 5-to-1
Zebrafish danRer10 ENSDARG00000100524 abca3b 5-to-1
Fruitfly dm6 FBgn0031170 CG1718 5-to-5
Fruitfly dm6 FBgn0034493 CG8908 5-to-5
Fruitfly dm6 FBgn0036747 CG6052 5-to-5
Fruitfly dm6 FBgn0051213 CG31213 5-to-5
Fruitfly dm6 FBgn0261998 CG42816 5-to-5