MmuEX0002964 @ mm10
Exon Skipping
Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24334126-24346402:-
Coord C1 exon
chr17:24346141-24346402
Coord A exon
chr17:24335535-24335662
Coord C2 exon
chr17:24334126-24334291
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTGGGTTTTTCTCTGTGTAGTTC
3' ss Score
6.98
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
AGGCGGAAGACTCTGATAACTCTCCTGGAAATGTTGATGCCATTACTGTTTTGTGCAATTGTATTATATCTCCGTTTGAATAGTATGCCAAGAAAGAAGTCATCTACCAACTACCCGGCAGTTGATGTCAGTTTACTGCCAGTATACTTCTATAACTATCCTCTGAAAAGTAAATTTCAGTTGGCTTATATCCCTTCCAAAAGTGAAACCTTAAAAGCTGTCACTGAAGTGGTGGAGCAAACCTTTGCTGTTGACTTTGAAG
Seq A exon
TTCTAGGCTTTCCTTCAGTGCCTTTATTTGAAGACTATATAATTAAGGATCCCAAGTCTTTCTACATACTGGTGGGAATTATTTTTCACCATGACTTCAATAGCAGCAATGAACCTTTGCCACTTGTG
Seq C2 exon
GTGAAGTATGACTTGCGCTTTAGTTATGTTCAGAGGAACTTTGTATCACCGCCGAGGCATTTATTTTTTCAAGAGGAGATAGAAGGCTGGTGCACAGCCTTTCTTTACCCACCTAATCTAAGCCAAGCGCCCCGGGAATTTTCATATGCGGATGGAGGAAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435_MULTIEX1-3/3=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(19.1=96.6)
A:
PF126982=ABC2_membrane_3=FE(9.5=100)
C2:
PF126982=ABC2_membrane_3=FE(12.4=100)
Main Skipping Isoform:
ENSMUST00000121226fB239
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGCAGTTGATGTCAGTTT
R:
TGCACCAGCCTTCTATCTCCT
Band lengths:
243-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types