BtaEX6108035 @ bosTau6
Exon Skipping
Description
uncharacterized protein LOC777692 [Source:RefSeq peptide;Acc:NP_001071620]
Coordinates
chr25:1855118-1864062:+
Coord C1 exon
chr25:1855118-1855379
Coord A exon
chr25:1862029-1862156
Coord C2 exon
chr25:1863900-1864062
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTGGATTTTTCTCTTTGTAGTTC
3' ss Score
7.09
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AAACGAAAGACTCTGGTAACAGTCCTTGAAATCTTGATGCCGTTACTGTTTTGTGCAGTTATAATATATCTTCGTTTTGGTAGTTTGCCAAGAAAGAGACCTCCTGTAGACTACAAAGTAATTGACATCACTTCTCTGCCAGAATTCTTCAATCAATTTCCTCTGAAAAATAAATTTCAATTAGTTTATATCCCTTCCAAAAGTGAAACTTTGAAGAATATCACTGAAATGGTGAAAGACTTCTTTACTGTTGAGTTTGAAG
Seq A exon
TTCTAGGCTACCCTTCAGTACCTGTGTTTGAAAAGTACATAATTCAAGATCCCAAAGCTTTTTATGTATTGACTGGGATTGTTTTTGATCATAACTTCAATGACAACACGGAACCCTTGCCACTTGAG
Seq C2 exon
GTTAAGTACTACTTGCGCTTCAGTTTCTTTCAGAGGAATTATTTATCCTTGAGGTTAATCCTCCAACAAGATGACATGCAAGGCTGGCTCACATCCTTTCTTTATCCTCCTAACCTAAGCCAAGAGCCCCGAGACTATGGAGTTTCTGAAGGGGGAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034643-'5-3,'5-2,6-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(19.2=96.6)
A:
PF126982=ABC2_membrane_3=FE(9.5=100)
C2:
PF126982=ABC2_membrane_3=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAAGAAAGAGACCTCCTGT
R:
TGCATGTCATCTTGTTGGAGGA
Band lengths:
257-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]