MmuALTA1027261-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24318156-24321147:-
Coord C1 exon
chr17:24320974-24321147
Coord A exon
NA
Coord C2 exon
chr17:24318156-24318328
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GTCTACCTTCTTTGGAACAGGCA
3' ss Score
6.7
Exon sequences
Seq C1 exon
CCCACGTAGGAACTGTGATAGGTGGCACTGTCTTCTTCTTCACTTATCTTCCCTACATGTACATCACTTTCAGCTACCACCAGAGGACTTACACCCAGAAGATACTCTCTTGCCTCTTCTCCAATGTTGCCATGGCAACGGGAGTCCGGTTCATATCTCTGTTTGAAGCAGAAG
Seq A exon
NA
Seq C2 exon
GCACAGGCATCCAATGGAGGAACATAGGCAGTGTCTGGGGAGACTTCAGCTTTGCTCAGGTGCTGGGGATGCTCTTGCTGGACTCCTTTTTGTACTGTCTGATAGCCTTTTTGGTGGAGTCTCTCTTCCCAAGAAAGTTTGGAATACCTAAGTCTTGGTACATCTTTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435-12-20,12-19-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.1=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(16.6=63.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTGTGATAGGTGGCACTG
R:
AGGAGTCCAGCAAGAGCATCC
Band lengths:
253-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types