GgaALTA1002925-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001967 | ABCA3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:HGNC Symbol;Acc:HGNC:33]
Coordinates
chr14:13581475-13582451:-
Coord C1 exon
chr14:13582278-13582451
Coord A exon
NA
Coord C2 exon
chr14:13581475-13581592
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGCTCCCTGTGTCCCTGCAGGGA
3' ss Score
10.79
Exon sequences
Seq C1 exon
CAAACGTTGCAGCTGCTGCTGGAGGCTTCCTGTACTTCTTCTCCTACATTCCCTACTTCTTCATCTCGCCTCGCTACGACCTGATGTCCCACAGCCAGAAGCTGGCATCCTGCCTCATCTCCAACGTGGCCATGGCCATGGGAGCACAGCTCATAGGCATGTTTGAAGGAAAAG
Seq A exon
NA
Seq C2 exon
GGACTGGCATTCAATGGAGGGACCTCATGAAACCTGTCAGTGTGGACGACAACTTCACCTTGGCACAAGTCCTGGGGATGCTGCTCCTGGACTCGGTGCTCTATGGCCTGGTGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967-11-15,11-14-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.0=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(8.9=65.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCCTGCCTCATCTCCAAC
R:
CATAGAGCACCGAGTCCAGGA
Band lengths:
175-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]