MmuALTA1011899-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000024130 | Abca3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:MGI Symbol;Acc:MGI:1351617]
Coordinates
chr17:24377686-24382016:+
Coord C1 exon
chr17:24377686-24377859
Coord A exon
NA
Coord C2 exon
chr17:24381899-24382016
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ACTTTCCCGACACCCCCCAGGCA
3' ss Score
6.8
Exon sequences
Seq C1 exon
CCAACATAGCAGCAGCCGTGGGTGGCTTCCTGTACTTCTTCACCTATACCCCCTACTTTTTCGTGGCTCCTCGGTACAACTGGATGACACTGAGTCAAAAGCTCTTGTCCTGTCTCCTATCTAATGTTGCCATGGCAATGGGAGCCCAGCTCATAGGAAAATTCGAAGCCAAAG
Seq A exon
NA
Seq C2 exon
GCACTGGCATCCAGTGGCGGGACCTCCTCAACCCTGTCAACGTGGACGACAATTTCTGCTTTGGACAAGTGCTGGGGATGCTGCTGCTGGACTCAGCACTCTATGGCCTGGTGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024130-22-28,22-27,22-26-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.9=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(8.9=65.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAGCTCATAGGAAAATTCG
R:
CCAGCACTTGTCCAAAGCAGA
Band lengths:
107-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types