Special

MmuEX0002969 @ mm10

Exon Skipping

Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24326356-24328788:-
Coord C1 exon
chr17:24328529-24328788
Coord A exon
chr17:24327639-24327755
Coord C2 exon
chr17:24326356-24326473
Length
117 bp
Sequences
Splice sites
3' ss Seq
AGGCTCTCTTGCTTTTCTAGGAA
3' ss Score
9.98
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GCTACAACAAAGAAGGCTTCCTGGCCATACAGCATGCCGTAGACAAAGCGATTATGCGGCACCATGCCCCCAAAGCAGCACTTAACATGTTCAAGGATCTCCACGTCTTGGTGCAGAGATTCCCATTTGGGCCCCATATCCAGGACCCATTCTTAGTGATCCTTCAGAATGAGTTCCCTCTGCTCCTCATGCTCAGCTTCATCTGTGTTGAGCTCATAATCACCAATTCCGTTTTGTCGGAGAAGGAGAGGAAACAGAAG
Seq A exon
GAATATATGAGTATGATGGGAGTGGAGAGCTGGCTGCACTGGGTTGCTTGGTTCATCACGTTTTTCATTTCTGTCTCAATTACTGTTTCTGTTATGACCGTACTTTTTTGCACAAAG
Seq C2 exon
ATAAACAGAGTGGCTGTGTTCAGGAACAGTAACCCTACCCTGATATTTATTTTTCTAATGTGTTTTGCCATCGCCACAATTTTCTTTGCATTCATGATGAGCACATTCTTCCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435_CASSETTE8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF126982=ABC2_membrane_3=PU(21.5=55.2)

							
A:
PF126982=ABC2_membrane_3=FE(17.0=100)

							
C2:
PF126982=ABC2_membrane_3=FE(17.5=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000046218





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000112538
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chr16:2373954-2374070 
Human
(hg19)
chr16:2423955-2424071 
Rat
(rn6)
chr10:13696819-13696935 
HIGH PSI
RnoEX0004820
(Abca17)
Cow
(bosTau6)
chr25:1868505-1868621 
BtaEX6108032
([1])
Chicken
(galGal4)
chr14:13583671-13583787 
HIGH PSI
GgaEX0002405
(ABCA3)
Chicken
(galGal3)
chr14:14349054-14349170 
HIGH PSI
GgaEX0002405
(E1BVQ5_CHICK)
Zebrafish
(danRer10)
chr3:12479731-12479847 
HIGH PSI
DreEX0009930
(abca3b)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGACAAAGCGATTATGCGGCA

				
R: 
ACTGTTCCTGAACACAGCCAC

				
Band lengths: 
250-367

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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