GgaEX0002405 @ galGal4
Exon Skipping
Gene
ENSGALG00000001967 | ABCA3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:HGNC Symbol;Acc:HGNC:33]
Coordinates
chr14:13582991-13584644:-
Coord C1 exon
chr14:13584385-13584644
Coord A exon
chr14:13583671-13583787
Coord C2 exon
chr14:13582991-13583111
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACAGTGTGACCTCCCTGCAGGAG
3' ss Score
8.62
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTTACATCCGGGAGGGCTTCCTGGCAGTGCAGCATGCTGTGGACCGGGCCATCATGCAGTATCACACCAACAGCTCTGCCACCAGCCTGCTGGAGAACATCACCGTGGTGGTGCAGCGCTTCCCCTACCCGTCCTACGTCAACGACCTCTTTGTCCTCGCCATCCAGAACCAGCTCCCACTGCTGCTCATGCTCAGCTTCACCTACACCTCGCTCAACATCGTCCGCGCCGTCGTGCACGAGAAGGAGAAGAAGCTGAAG
Seq A exon
GAGTACATGCACATGATGGGCCTCAGCAACTGGCTGCACTGGAGCGCCTGGTTCCTCATGTTCTTCCTCTTCCTGCTGGTGTCTGTGTTCTTTGTCACCCTGCTCTTCTGTGTCAAG
Seq C2 exon
GTGAGTGAACAAGGAGCTGTGCTCACCAGCAGTGACCCCACGCTGGTGTTCACCTTCCTCGCCATCTTCTCCATCTCCACCATCTCCTTCAACTTCATGGTGAGCACCTTCTTCTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.2=100)
A:
PF126982=ABC2_membrane_3=FE(8.5=100)
C2:
PF126982=ABC2_membrane_3=FE(8.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGAACATCACCGTGGTG
R:
TGGAGATGGAGAAGATGGCGA
Band lengths:
250-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]