RnoEX0004850 @ rn6
Exon Skipping
Gene
ENSRNOG00000050057 | Abca3
Description
ATP binding cassette subfamily A member 3 [Source:RGD Symbol;Acc:1307174]
Coordinates
chr10:13746860-13749384:+
Coord C1 exon
chr10:13746860-13747119
Coord A exon
chr10:13748950-13749066
Coord C2 exon
chr10:13749264-13749384
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATGCTGTCTCCCACTCACAGGAG
3' ss Score
9.31
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGTACATCCGTGAGGGCTTCCTGGCAGTGCAACACGCTGTAGACAAAGCCATCATGCATTACCATGCCAACGCCTCTGCACACCAGCTGTTCCAGAAGCTCACGGTGATCACCAAAAGGTTCCCGTTCCCGCCATACATCTCAGACCCATTCCTCATTGCCATCCAGTACCAGCTTCCTCTGCTGCTCATGCTGAGCTTCACCTACACCTCCCTCACCATCATCCGGGCTGTGGTGCAGGAGAAAGAGAAAAAACTAAAG
Seq A exon
GAGTACATGCGCATGATGGGGCTCAGCAGCTGGCTACACTGGAGCGCTTGGTTCCTCATGTTCCTCCTGTTCTCCCTCATCGTGGTCTCCTTCATGACCCTCCTGTTCTGTGTCAAA
Seq C2 exon
GTGAAGAAGGACATAGCAGTCCTTTCCAACAGCGACCCCTCCCTGGTTCTGGCCTTCCTGCTGTGTTTTGCAATCTCCTCCATTTCCTTCAGCTTCATGGTCAGCACCTTCTTCAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050057-'11-11,'11-10,12-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.2=100)
A:
PF126982=ABC2_membrane_3=FE(8.5=100)
C2:
PF126982=ABC2_membrane_3=FE(8.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCCCGCCATACATCTCAG
R:
AAGGTGCTGACCATGAAGCTG
Band lengths:
247-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]