RnoEX0004820 @ rn6
Exon Skipping
Gene
ENSRNOG00000039656 | Abca17
Description
ATP-binding cassette, subfamily A (ABC1), member 17 [Source:RGD Symbol;Acc:1560494]
Coordinates
chr10:13695731-13698983:-
Coord C1 exon
chr10:13698724-13698983
Coord A exon
chr10:13696819-13696935
Coord C2 exon
chr10:13695731-13695848
Length
117 bp
Sequences
Splice sites
3' ss Seq
AGGCTCTCTTGCTTTTCTAGGAA
3' ss Score
9.98
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GATACAACAAAGAAGGCTTCCTGGCAATACAGCATGCCGTAGACAAAGCCATCATGCTGCACCATGCTCCCAAAGCAGCACTGGACATGTTTAAGAATCTCCAGGTCTCGGTGCAGAGATTCCCATCTGGGTCCCATATCCAGGACCCCTTCCTAGTGATCCTTCAGAATGAGTTCCCTCTGCTCCTCATGCTCAGCTTCATCTGTGTTGAGCTCATAATCACCAATTCCATCTTGTTGGAGAAGGAGAGGAAACAGAAG
Seq A exon
GAATATATGTATTTGATGGGACTGGAGAACTGGCTGCACTGGGTTGCTTGGTTCATCACGTTCTTCCTTTCCGCCTTAGTTACTGTTTCCGGTATGACGGTTCTCTTTTGCACAAAG
Seq C2 exon
ATGAACGGTGTGGCTGTGTTCAGGAACAGTAACACTACCCTGATATTTATTTTTCTAATGTGTTTTGCCATCGCCACAATTTTCTTTGCATTCATGATGAGCACATTCTTCCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039656-'9-9,'9-8,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.4=100)
A:
PF126982=ABC2_membrane_3=FE(10.8=100)
C2:
PF126982=ABC2_membrane_3=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAAAGCCATCATGCTGCA
R:
TGTTCCTGAACACAGCCACAC
Band lengths:
248-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]