BtaEX6108032 @ bosTau6
Exon Skipping
Description
uncharacterized protein LOC777692 [Source:RefSeq peptide;Acc:NP_001071620]
Coordinates
chr25:1865692-1869654:+
Coord C1 exon
chr25:1865692-1865951
Coord A exon
chr25:1868505-1868621
Coord C2 exon
chr25:1869537-1869654
Length
117 bp
Sequences
Splice sites
3' ss Seq
GGTTCTTTCACTTTTTCTAGGAG
3' ss Score
8.89
5' ss Seq
GAGGTACAT
5' ss Score
6.75
Exon sequences
Seq C1 exon
GATACTACCAAGAAGGCTTCCTGGCCATACAGCATGCGACAGATAGAGCCATCATGTGGCACCACGCTCCCACGGAGACGACCGGGCTGTTTCAGAGCCTCAGTGTGCTTCTGAAGAGATTCCCACATGGTGCATATGTGCGGGACATCTTCTTCTTGGTCCTTCAGAATGAGTTCCCTGTTTTCCTTATGCTCAGCTTCATCTGCATTGAGCTCATCACCATCAATTCCATTGTACTGGAGAAGGAGAGAAAGCTGAAG
Seq A exon
GAGTATATGTGCATGATGGGGCTGCACAGCTGGCAACACTGGGTGGCTTGGTTCATCGTGTTCTTCATTTCTGCCTCCATTGTTGTTTCTTTCATGACCCTTCTCTTCTGCATAGAG
Seq C2 exon
TTTGACGAGTCAGCAGTGTTCGGAAACAGTGACCCTAGTTTGATATTTGTGTTTCTAATGTGTTTCGCAATTGCCACAATTTTCTTTGCATTCATGATCAGCACTTTCTTCCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034643-'9-6,'9-5,10-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.4=100)
A:
PF126982=ABC2_membrane_3=FE(8.6=100)
C2:
PF126982=ABC2_membrane_3=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATGCGACAGATAGAGCC
R:
TTTCCGAACACTGCTGACTCG
Band lengths:
257-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]