MmuINT0007761 @ mm10
Intron Retention
Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24300291-24307600:-
Coord C1 exon
chr17:24307446-24307600
Coord A exon
chr17:24300447-24307445
Coord C2 exon
chr17:24300291-24300446
Length
6999 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCCCGTTTCTTGCCTTTCAGCTG
3' ss Score
10.66
Exon sequences
Seq C1 exon
GTCTCATTACTCCATCAAAAGGACATGCATATATCCATGGATGTGAAATTTCAAAAGACATGGTTCAAATTAGGAAGAGCCTGGGCTGGTGCCCACAGCATGACATTTTATTTGATAACTTTACAGTAACTGACCACCTTTATTTCTACGGTCAG
Seq A exon
GTGAGTTGGTGAACAGTGGGTCTGCGTCCACTCTTGGGAATGGTAAGAGAGACAGTGGGAATGTGTCCACTCTGAGGAACGGTAAGGGAGACAGTGGGTCTGTGTCCATCCTTAGGAATGGTAAGAGATGCAGTGGGTCTGCATCCATCCTTAGGAATGGTAAGAGAGAGGAAGTGGGTCTGGATCCATCCTTAAGAATGGTAAGAGAGGCGCTCTGTTTCATCTGCTTTAGTCTGGGGTTGGGTGGGGTCTTGTTTGTTTGTTTGTTCATTTGTTTGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGAGCAGGCTGCCCTCGAACTCAGAAATCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCGGTGGGTGGGGTCTTTTTAAGGGACCATATATATAAGTTTCTCCACATGCTGACACTAGATGTGGGAAGGCAGTTTCCTGTCTGATCCAGTTCTGTATACACTGACTGGGTATCCTGTAACTTAGACCTGATGCAACCTGTAGCTGGCTAACTCTCCCCATCAACCCAAGCATCCAGTCCCACAGGACCGTCTTCCACTTCAGATGCCACTTGCAAACTCAAGTCACTTCCATAGCTCACGCCCCAGGTTCAGTATTTTCTGTGACTGCTCACAAAACTGGGGAACATGAACTAATAGTGACTAGTTCATTGCAGAAATAAAAGATAGATAAATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGGATGACTACAGTAACACTCAGATGAAGCAGATATAGCAAGGCCTTGGGAAGGGGTAAGTTGTCCACACTCCTTAGGAGGCAAACCCTCCCAGCTCTTCGAAGCATTTATCAACCCAGGAACCCCATATGGAGAAGCTTAGAAATGTTTGCACAAGTTTTATTATGTAAGCATGATGGATTAGTTATCAAGTTTTCCTGGAGGAGGGGAGTAGAGGTTCCGATCGTAGCTTAGTCTTTCCGATGACCAGTCCCAACTCCTAAAGCTACCCAACAGTGTGCTGAGAGTCACCTCATTAGAACAAAAGACACTCCATTCGTTTAGATAATTCTAGGGAATTAAGGATCTCTCTGTAGCAAAGAAAATCACGTATCAAAGTAAAGACCAAATATTAGGACAAAAGAGACTTCTAGAATATTTATCAATTTTTTGCATTCAAATTTTTAGTGTTTTTTTAAAAGATGTGTTTATTTATTTCATGTATATGAGTACACTGTAGCTGTACTCATGTGGTTGTTGGGAATTGAATTTTAGGACCTCTGCTCACTCCAGTCAACTCTGCTTGCTCAATCCCTGCTCTCTCTGGCCCAAAGATTTATTTATTATTATACATAAGTACATTGTAGCTGTCTTCAGAAGAGGGCATCAGATCTCATTATAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGTTCTTACCCGCTGAACCATCTCGCCAGCCCAATTTTTTAGTTTTTTAGTTTTTTTTTTTTTAAGATTTATTTATTTTATTTGAGTACACAGTTGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTATAGATAGTTGTGAACCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGTTCTTAACTTCTGAGCCATCTCTCCAGCCCCAATTTTTAAGTTTTTATTGAGATAAAATACACATCACATAAATTTTGTCATCTCATTCTTGTCTGGTCTGTTTGTTTTGAGACAAGAGTCTCACTAGGTAGAACTTGGCTGGCCTGGAACTTGCTATGTATACCTGGCTGAACTCAAGTCACAGAGATCCACCTACCTCTGCCTCCTGAGTGATGAGCCTAATGGTGTACACTATCATGCCTAGTGATATTTTTTATTAAGTCTTTGAGAATTTCATTCAATGTATTTTGATCATATTCACTACCCAACTCCCTCCTCTCATTTCCACCCTCAATTCCCCACCTCCCCAACTTTTAGGTTTTTTCATGTTCCCTGTCCCCGCTCCCCCACAGGGTTCAGTCTGTGTTCTGCTTTCTTGGACGTAGGTCTGTCCTGGAGCAGGAGAGTTGTACGTATAAATGAGTAGTGATTCTGACAGCATGTACCAGACCAACACAAGCTCAATCCCGACAAAATCCCAACACAGACAGGGAGGTGGGCAGGAAGTCCCACTACTTGCTTTTCTTGACATCCTGACTTGGACCTGTCATGGAGACTTTCCTCTCTAGTTAGGTCTACTTAAAGTTCTTTGTACCTCTTGTGGTTGGGTGTCTATTTCTGTGTTTGGAAAGTCTTCTGCTGTAATTTCATTAAATAGTCTGTTTAGTGCATTTGATTTTATCTTTGTTCCTTCTTCTATACCATGAATTATTATGTTTGACCTTTTGAATATATCCCAGATTGCTTGGAAATTTCACTGGTGCTCCTTAATGCCTGTATTAGTCAGGGTTCTCTAGAGTCACAGAACTTATGGCTAGTCTCTAGATAGTAAAGGAATTTATTGATGACTTACAGTCGGCAGCCCAATTCCCAACAATTGTTCAGTCACAGCTGTGAATGGAAGTCCAAGGATCTAGCAGTTACTCAGTCTCACGCAGCAAGCAGGCGAAGGAGCAAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCAGAAGGTGTAGCCCAGATTAAAGGTGTGTTCCACCACACCTTTAATCCCAGATGAAAGGCGTAGCCCAGATTAAAGGTGTGTTTCTTAAACTCGGAGATTCAATCTTCTGGAATCCATAGCCACTATGGCTCAAGATCTCCATATCAAGATCCAGATAAGGCTCTCCAAGCCTCCAGATAAGGGTTACTGGTGAGCCTTCCAATTCTGGATTGTAGTTCATTCCAAATATTGTCAAGTTGACAACCAGGAATAGCCACTACAATGCCTTAACTCCTTATCTGTCTGTTGCTATTATTGTCTCTACTTGGCCCTCCATCACAGGAATTTATCCTTTTATAGAGTATGAATATATAGGATATATATATTAATGATAGTATTTGTTGGGATTTGTATTTGATTGACTATCTCCTTGATTTCAAATATCTCTATTTGGTTCTCTTCCTCTTCCTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTGTTTTATTGTTACCAGATTGGCCTCCAACTCAGAGAGATCTGCCTGCCTCCCAAGGGTTCGGACTAAAGGCGTGCACCACCACTGCCCAATTCTAGTTATTATTTTTTTCTGATGTTTCGATCTCTTTACTGAATTTTTCTCCACATTTTGAAAGTTTCCTTCAGTTTACTGACTAGCTCATTCACGTTGGAGACTGTATTGTCAAGGTCTTGGGTAAGTTTTCTTAGTTCATGCATTTGTTTGTATCTTCTTGTTTGCTCATTAATTCTTTTAAAAAGTAAGACTGTGAATTTTCTCTCATACATTTCAGCTCTGTCTGTAGTTTTAGGTTCCCTTACAGGGGAGCTGGTTGATTGGGGAGGGTTATGGCTGGTGGTTGTATTTTATTCTTTGTTTTTCTTTGTTTTGTCTTATACACCTGTGGGAGCCTGGCTGTCTCTAAGTTTTGACTTTCCCTTCTTCTCCCTTCTTCCCAGTTAGTCTGGATGGTTTATTTTTGTGACTCTTCCTAGAAGGTTACCTACGTGGGTTTTGGTGTTGGTGTTGAATGAACTTGCTGGAGCAATTACATCTTGGCTGTGTGCCAGTAGCCCTAAGGGCAGGCTGTACACTAAGCCAAAGGCAGCCAGGTGGAGGCAAAACCTTGGCCATCCCTCGAAATCTTGTAATTCTGGGAAAAGGACATCAAACACCAGAAGCCAAGGTTAGACCCAAAGGCCTGAAGTAACCTAGGGCCCCAGTATTATAGACTCCCCAAGTCCTTCAGTGAGTCTCAGACATCAAAACCACACATTCACACTGACCACAGGGAGCCAGAGCCCCAACATTTCAGGGGATCCTGTGCATCCTGGAGTTGAATCTCATACGGTGCACTGACCTCTAAGGCCACTGGAACTGGAGACCTGTCCCTATACCTCTCCGAGATCCCCGTGTGAGAGCCGGGATTCTAGTCTCAAGGTGTTCTCTGGGCTCTCTGGAGCAGAAGCCCAGTCCTTTAATGTCCCTGGGTCTCACTGAAACTTGAGGCCTGAATACAAGTACTCTCTGGTCTCACAGAAATGAGAGGATGGGACCCTTGGAGCTTAGAGGCTATTTGTGCGCTTCTTTGGAGAAATCTCTCTCCATATCCTGTTTTATTTTTTAGTCCAGTTGTTTATCCTTTAGTAATTTATTTAAGAGACATTAATTAGATGCTGGCTACTAAGCCCCTGACAAATAGATGTAGTCTGCAAAAACGTTCTCTAATACTACCCACTGTTTGTTTTTGTTTTGGTTTGGTTTTTTGGTTTTTTTCCAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGTCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCACTGCCCAGCCTACCCACTGTTTTTATTTCTCAATTATTGACAGTAAATTTTGATACACAAACGTTTATTTTTATTGTTTGCTATAGACCTGTGCGCATCTGTGCACACACACCCCCACACACACGACACACATACACACACACACACACACACTACACACACACACTCACACACATACACACTCACACTCATACACACTCACACACACACACTACTCACACACACTCACACACAGACACACACACTACACACACGCGCGCGCACACACACACACACACACACTACACACACACGCACTGCAATGACTCTTTAGGCGCTGGAGAGATGCTCAATGACTAGGAGCCCTTGTTCTCTAAGAGGGCCCGGGTTGGGTTCCCAGCGCTCCCACAGTGGTTCACAAGCCTCCGTAGCTCCAGTTCTGGAGATCTGACTCCCTCTTCTGACCTCTGTGGGCAGCAAACATGCATGTGGGCTACACATATGCGTGCAGGTAAAGCACTCACACATAAACTAGGTAAGTCTAACTTTGAAAAAGGAAAGAAAAGACTCTCTTTAGCTGAGCATGGTGGCACATCCCTGTAATCCCAGCACTCAGGGCAGAAGGATCACTGGAAGTTCAAGACCCGCACTAGTCTGCATAGCAAGTTCCAGGCTACCCAGAGCTACCTAGGAAGAGCTTATCTAAAAACACAGATGCATTCATCTTCTGCCCTTGGATGGGCATCACTGTTGTCAGAATCTCAGGTCCATTCCGTTTTCTGTGTGCCTATCTTTATAGAACTACCTCAGTGCTGTATGGCCGTGGCTTTATAGTAAGTGCTGGGTTCAGAAGTGCGACTCCCTGACCCTGTTCTGGTCTTCAAGGCTGTTTTGATTATTTTGACCTGATTGTACTTCCAGGCAAGTTTAGGAACACAAATTTTGTCCATATGTACAATAAATATTTTAAGGGCTATCAGAATTTGCAGGGCTCTTTGAATAGTAATGGTATCTTAACATTATTAATAATGTTCAACTTTCTAATCCTTGAACATGAAATGTGTTTCTACTTACTTGGTTTCTTTTAATTTCTGTCGATAATGTTGTATAGTTTTCAGTATGCAATTTTTGCATTTACATGGTTAAATTCATTCCTAAATACTTTTGTGATGCTAAAGTCAACATGTTTTTAGACTGTTTATTGCCAGTGTAAAAAGATACAAACTTGTGGGTGAGGGATGTAGCTTAGTTGATACAGCAATGGCCTAATATGTATGAGGCCCTGGGTTCAATCCCTACCACCATATGATCTTGTCTGTATGACCTACAATATGACTTGAAGACCCAACCAGGGACAAAAGAGGCCATATAAATTCTTTACTATGAAACAGTAGTTCTAAAAAAAACATATGTTGAGAAATCCCACTTAGCCCTAACATGTTTTTTAATGTACCTATGCACTTATTTTTTAAGTCATTTGCTGTTAGAAATGGGTCTGAGGGTCTAAGACCATGACCACATGACCCAAAGTATTTCAACAAGGTGAAAACTCTAATGCTGCAGAAGGTTGGTCAAGCAATCAAACATACACAGTAGGGGCTCTCTGCCTTTGCCTTTGCCTCTGCCTCCGCCTGATTGGTCAGACGCTGGCCTCACATTCTTATGTAGTTGGCTAACTCAGAATGACATCACTGGTAAGCAAAGTGCAGCTTTTGATAACAGGATGTAACTTTGAGCAAATACTTTGATCCTAGAAAAGTGTTGATTTGCCAGGCCGTAGTGGCACACAGCTTTGATCCCGGCACTAAGGACCCAGAGGCAGACAGATCTCTGTGAGTGCGAAGCCAGCCTGGTTTACAGAGTGAGTTCTGTATGGCCAGCCAGAGCCACACTGTGAGACCCTGTCTAAAAATAAACCAGAGAAGGGGGAGGGGGGGAGAGGTTGCTGTTGATGTGGAGGAGAAATCTTTGCTAGGCGGTCTCTTTGCATCTTTACAGATTTCTTTAAAGATGAGACTTCTTTCATCTCATTTAACCTTAGATAGAAAGGACAGATTTCATTTACATTCCCCACATTTATTTATTCACTTACATACTTCATATCTTCCTCTGTCCCTTTCCCTGAAAACAGTGTTTCTGGCATACTTTCCTTGCCCATGTTTTATTTGTATACAATCAAAATCTTGATTAGATAGCTCAGCTTCCATCAGTATCACTTGCTTCACAGCCCCCCGTTTCTTGCCTTTCAG
Seq C2 exon
CTGAAAGGTCTGTCTCCTCAGGACTGTCACGAGCAAACCCAGGAGATGCTGCATCTGCTTGGTCTGAAGGACAAGTGGAACTCAAGGTCCAAGTTCCTGAGTGGGGGCATGAAGCGCAAGCTCTCCATTGGCATCGCCCTCATAGCGGGCTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435:ENSMUST00000121226:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(35.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(35.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types