GgaINT0016420 @ galGal3
Intron Retention
Gene
ENSGALG00000001967 | E1BVQ5_CHICK
Description
NA
Coordinates
chr14:14343734-14344365:-
Coord C1 exon
chr14:14344211-14344365
Coord A exon
chr14:14343890-14344210
Coord C2 exon
chr14:14343734-14343889
Length
321 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
3' ss Seq
TCCTTCCCCTTGTGTGGCAGCTG
3' ss Score
8.8
Exon sequences
Seq C1 exon
GTCTGTACTCCCCAACGAGTGGGCAGGCGTACATCAATGGCTACGAGATCTCTCAGGACATGGTTCTGATCCGCCGGAGCCTGGGGCTGTGTCCGCAGCACGACGTGCTCTTTGACAACATGACGGTGGAGGAGCACCTCCACTTCTATGCAGGG
Seq A exon
GTGAGCCCGGTGCTAGGGGCACTGCCTGGCTGTGCGTGCAAAGCTGGTGCTGGGGGGGGGGGGGTAGGTGGGCAGCATGGGGCTCACTGCGGGGCACCACGCACTGCTCACGGGTCTGTCATCGTGCAGGCTGGGGGTGATGCCCAGAGGGTGGGCAGAGGCCATCTCTGTACTGCCTTGCCTTCCTGTGTGGATGCAGGAGGGTGCGGAGCGGGGGTCCTGGTGGGGTTCAGCAGCCGATGGCTGATGAGGTGGGAAGGGTCTTTGCTGGGGATGCTTGCCACTCTGAGTGTACTTAACCTCCTTCCCCTTGTGTGGCAG
Seq C2 exon
CTGAAGGGATACCCAGCCTCCAAGTGTCCTGAGGAGATCAACCATATCCTGCGGATCCTCAACCTGGAGGACAAGCGGCACTCTCTGACCAAGGCGCTCTCTGGTGGCATGAAGCGCAAGCTGTCCATTGGCATCGCCCTCATCGGGGACTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967:ENSGALT00000003054:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(35.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(35.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTACTCCCCAACGAGTG
R:
CTTGGAGTCCCCGATGAGG
Band lengths:
311-632
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]