RnoINT0010149 @ rn6
Intron Retention
Gene
ENSRNOG00000039656 | Abca17
Description
ATP-binding cassette, subfamily A (ABC1), member 17 [Source:RGD Symbol;Acc:1560494]
Coordinates
chr10:13670223-13675994:-
Coord C1 exon
chr10:13675840-13675994
Coord A exon
chr10:13670379-13675839
Coord C2 exon
chr10:13670223-13670378
Length
5461 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCCCATTTCTCGCCTTTCAGTTG
3' ss Score
9.41
Exon sequences
Seq C1 exon
GTCTTATTCCTCCTTCAAAAGGACACGCGTATATCCATGGCTGTGAGATCTCGAAAGACATGGTTCGGATCAGGAAGAACGTGGGCTGGTGCCCACAGCATGACATCTTGTTTGATAACTTCACGGTAACCGACCATCTTTATTTCTACGGTCAG
Seq A exon
GTGAGTTGGAGAACAATGGGCCCGTGTTCATTCTTAGGAACTGTAAGGTAGACTACAGCACTGCTTTTTTCTGCTTCATTCTGCTTCAGGGGTCTTTTTAAGGGAATATGCATGTGTTTCTTGAGACCAGATATGGGGAGGCAGTTTCCCGTCTGATCCAGTCCCGTACACACTGACCGGGGGCGTCCTGTTATTAAGTTCTCGAGCTACCTGGAGCCAGCGACCTCTCCTTATCAGCTTGCGCATCCAATCCCACAAGAAGACCTCCCGCTTGAGAGGTCACTTGCAAAGCTCAAGTTGTTTCCATAGCTCATGCCCCGGATTTGGTATTTTCTGTGACTGCTCACAAAACTCAAAGGAACACTTACTTATAGTGACTAATTCCTTGCATAAATAAATAAATAAATAAATAAATAAATAAATAAGGCTACAGTGAGCACTCAGGTGAAGCAGATACAGCAAGGCCTCCCACTTATCTGTTCCTTCTTCTATACCATGAATTATTAGCTTTGACCTTTTGAATGTGCTCCAGATTGCTTAGAAGTTTCACCCATGCTCCTTAATTCCTTAATTCCTTATCTGTCATTGGTATTATTGTCTCCACTTGGCCCTCCATCACAGAAATTCATCCTTCTACAGAATATGAATATAGACTATGAATATATAGGATGAATATATAGACTATGAATATATAGGTCTGTTATATTGATAGTATTTGTTGGTATTTTTGTTTGACTCCTTCATTTTAAATCTATTTGGTTCTTTCTTTCTTCCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTCCTTTCTTTCTTCTTTTCATTTTGTTTTATCGTTACCAGATTGGCCTCAAACTCACAGAGATCCACCTTCCTCCGCCTCCTGAGTGTTGAGACTAAAGGCACACACCACTGCCTGGTTCTAGTTCTTTTTTTTTTTTTTTAATGTTTCAATCTCTCTCTTTACTGAATTTTTCTCCACATTTTGAACTTCTCCAATTTACTGACTAGCTCATCCCTTTGGAGACTGTATCGAAAAGGTCTTGGATAAGTTTTCTTAGCTCGTGCATTTATTTGAATCTTCTGTTTGATCATTAATTCTTTTAAAAAGTACGACTGAATTTTTTCTCAGACGTTTCAGCCATGTCTGTAGTCTTAGGTTCCCTTGCAGGGGAGCCAGGTGACGGGGAGTAGGTTGTGACCGGTGGTTGGATTATGTTCTTTGTTTTTCTTTGTTTTGTCTTATACATCTGTTGGATGCTGGTTGTCTCTAAGTTTCACCTTTCCCTTCTTCCAGGTTAGTCTAGATGTTTTATTTTTTGTGACTCTCCCTAGAGGGTCACCGACATGGGGCTTGGTGTTGATTGTTGAATGGAGCTGCTAGGCGGTTCCATGTTGGCTGTGTGCCAACAGGACGAAGGGCAGGCTGTTCACTAAGCCACAGGCAAAGGCAAAACCTTGGTCATCCCTTGAGATCTTGTAATTATGGGAAAAGGACATCAAACACCAGGCCCACTGAAGTCTGTGTACTCTCTGGAAGCCATGGTTAGAGCCACAGGCCTGACGTAACCTAGCACTCCAGTAGTATAGGCTCCCCCAGTCCTTTAGTGAACCTCAGGAGTCAAAACCGCGCATCCACACTGACCTCCAAGGCCCCTGGGACGGGAGGCCTGTGCTTGTACTGCCCCCAGACCCCCTACTCGAGCTGGGAATCAGGTCTCAGGGCTCTCTGGAGCAGAAGGCCTCTTCCTTTAATGCCCTTGGGTCTCACTGAAACTGGAGGTCGGAATGCAAGTACTTTCTGGTCTCACAGAAACCAGAGGCCTGGTCCCTTGGAGCTTAGAGGCTGTTAGTGTGCTTCCTTGGAGAAATCTCTCTCCATATCCTTTTTCTAGTTGAGTTGTTTAACCTTTAGTAAGACATTTTTTTTTTTTTTTGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCTTAGTAAGACATTTTTAATTAGGTGCTGGCTACTAAGCCCCTGAAAATTAAGTGTGGTCTGCAGAAACGTTCTCCAACACTACCCACGGTCTTTATTCCCACTATCGATAGTAAATTCTAATACACAAAAGTTTATTTTTATTGTTTACATACCCCTGCACACACACACTGAAATGACTCTATAGGAGCTGGAGCGATGGCTCCATGATTAAGAGCACTTGTTCTTCTTTCAGAGGACTTAGGTTGGGTTCCCAGAACTCCCACAGTGGTTTACAACCATCCGTAGTTCTGGAGATCTGACTCCCTCTTCTGACCTCTGTGAGCACCAAACATGCATGTGGTCTCCGTACATACGTGCAGGCTAAAAACTCACCCACACATTAAACTATGTACATCTAACTTTTAAAAGGGAAAGAAAAGACTCTCCTTAGCTGAGCAAGGTGGCACATACCTGTAATCCCAGCACTAGGGGGAGGGAGGGGCAGAAGGATCACTGCGAGTTCAAGACCAGCGCTAGTCTGCATAGCGAGTTCCAGGCTACCCAGAGCCACACAGGAAGAATGTATCTAAAAGCCAAGATGCATCCCTCTTCTGTCCTCGAACAGGCACCACAGTTGTCAGAATCTCAGAAACGACTGCCTTTCTAATGCCTGTCTTTATAGAACTACCTCAGTGTGGTGTGACTGTAGCTTTACAGTAAGCGCTGGCTTCTGAAGTGCGACTCCCCTACTCTGTTCTTGTCTTCAAGGCTGCCTTGATTATTTTGCAGGCGAGTTTAGGAACACAAGTTTTGTCCATATCTACAAAAACAAACAAAACAAAACAAACAAAAACATGTTTTAAGGGCTGTCAGAATGTGCAGGGCTCTTTGAATAGCAATGGTATCTTAACGTTATTAATAAAGTTCAGCTTCCAGTCCTTGAACAGGAAATGTGTTTCTGCTTACTCAGTCTCTTTCAGAAGTGCTTTGTAGTTTCCAGTGTGCAACTTTTGCATCTACATGGATAAATTTACTCCTAAATACCTTTGTGATGCCAGAGTAAACTGTGTTTTTAGATTGTTTATTGCCAGTATAAAAAGATACAGACTTGTGGGTGGGGGGTGTGGCTTAGTTTATGCAGCGCTTGCCTAATGTGTGTGAGGCCCTGGGTTCAAGCCCCACCACCATAGAAAATCAAGCATGGTGGCACAGCCTGTAATCTCAGTTCTCTAAGAAGTTGAGGCAGGAGGACCAGTGTAATAGTATAGTTCAATGTCATTCATAGCAACAGAGCATACTCAAGGTCAGTCTGAATCACACGCTCAAAACAAAACCAAACATAGCTGGAGATTTAGCACAATTGGCAAAGTACCTGTGGTCCAAGCTACCCACAAGCAGAGCATAGTCTCTTAGCCCAGGCCTGAGGGAGGTGGGGAGGGCTGGCGGGGGGAATGGAGGGATGGGAGGATGGGAGTTGGGGATAGGGTGATTTTGTAAATGAAGTGGGATAGGCTGATCCATGGAGCTCATTGGTTTGCCAGTTTAGCCAATTGGTGAGCTCCAGGTTTAGTGAGAGACTCTGTTTCAAGAGATAAGATGGAAAAGCAAAGCACAGAGAGAACAAAACACACACACATTCACACACACACTCACACACACATTCACACGCTCACACGCTCATACATTCACACACACATTCACACACATACCCACACAACATTCACCACACACATACACTCACACACACACACATTCACACACACACATACATTCACACACACATACCCACACAACATTCACACACACACATACACTCACACGCTCACATATACCCACACAACATTCACACACACACACATACACTCACACACACACATTCACACACACATACATTCACACACACATACCCACACAACATTCACACACACACTCACATATACACACACACATACATACACACACACACTCACACACACATTCACACGCTCACACGCTCATACATTCATATACTCACACATTCATACACACATTCACACACATACCCACACAACATTCACCACACACATACACTCACACACACACACATTCACACACACATACATTCACACACACATACACACACACTCACACACACATTCACACGCTCACACGCTCATACACTCACACACACACATTCACACACACATACATTCACACACACATACCCACACAACATTCACACACACACTCACATATACACACACACACATACACACACACACACACACACACACAAAATAATGTGGAGAGCAGTTGGTGGAAGACACCAATATCAGACTAGCCTACATGCACAAATGCACTTGTGTACACACAAGACATGTGCATGAATGTGTGTGCATACACAGAGACATAGGTACACACACACACACACACAGATATACACACACTCCAAAACAAAGAGAGAAATACAAATTTGCACAAGGCTGGCCTTTCAGAGACGATTACCTGGAAGACTTGGTGACAAAGATGCTCTTGTCACTTGGGAAGTCCCAAACTCAAGAGAGTCCTTGCCAGCAACCAGGGACAAATGCCATATAAATTCTTCACCATGAAACATCAGTTTTAAAAACCATGTTGAAAAATCTCACTTAGCGTGAGTCTTAGCATGTTCAGTAATGTGTCCGTGTATTTATTTTTAAGTCATTTACTGTTAGAACTGGGTCTGAGGGCACAAAACTATGACCACACAAGCCCAAGTATTCCAACAAGGCAAAAGTTCTAAACAGAAGGGTGGGTAGCCAAGTCAGGTCAAGCAATCAAAGGCACACAGCAGGGTTCGATGCCTCTGCCTCAGCCTGAGTGGTCAGACACTGGCCTCACAGTCCTACATAGCTGGCTAATTCAGAGTGACGTCACTCACAAGCGGAATACAACTTTGAGCAAATACTTTGATCCTAGAAACGTGTTGATTTGCCAGGCAGTAGTGGCACACAGCTCTGATCCCAGCACCAAGGACCCAGAGGTAGGCAGGCCTCTGTGAGTTTGAGGCCAGCCTGGTCTACAGAGCCAGCTCTGTATGGCCAGCCAGAGCTACACAGTGAGACCCTGTCTAAAAATAAACCAGAGAAGGAGGAGGGGAGGGGAGATTGGTGTTGGTGCGGAGGAGGACTTTTTGCCAGATGGTCTCTACGTCTTTACAGATTTCTTTAAAGATGGGACTTCCTTCATCTCACTCAACCTCCAATAGAAAGGATGTGTTTCGTTTACATCCTCCACATTTATTTATTCACTCACATAATTCATATATCTTCCTCTGTCCCTTTCCCTGAAAAGAATGTTTCTGGCATACTTTTCTTGTCCGTATCTTATGTATATACAATCAAAAGCTCGATTAGACAGCTCAACTCCCATCAGTATCTTGCTTCATAGCAGCCTCCCCCACCCCCATTTCTCGCCTTTCAG
Seq C2 exon
TTGAAAGGCCTGTCTCACCAGGACTGTCATGAGAAAATAGAGGAGATGCTGCACACCCTCGGGCTGGAGGACAAGCGGAACTCAAGGTCCAAGTTCCTGAGCGGGGGGATTAAGCGCAAGCTCGCCATCGGCATCGCCCTCATAGCGGGCTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039656:ENSRNOT00000060818:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(35.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(35.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]