HsaINT0000576 @ hg19
Intron Retention
Gene
ENSG00000238098 | ABCA17P
Description
ATP-binding cassette, sub-family A (ABC1), member 17, pseudogene [Source:HGNC Symbol;Acc:32972]
Coordinates
chr16:2429429-2436257:+
Coord C1 exon
chr16:2429429-2429582
Coord A exon
chr16:2429583-2436104
Coord C2 exon
chr16:2436105-2436257
Length
6522 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGCGTCCCCTGTCGTTGCAGCTG
3' ss Score
10.37
Exon sequences
Seq C1 exon
GTCTTATTCCCCCTACAAGTGGATGTGCATATGTCAATGGATATGAAATTTCACAAGAGATATTTCACATTAGGAAGAGCCTGGGCTGGTGCCCCAACATGATGTCTTATCTGATAAGTTAACAGTAGCAGAACATCTTTCTTTCTATGGTCAG
Seq A exon
GTGAGTCGATGGATAACAGGGATTTGTTTCCTCTGTATCCACTCTTGGGAATGATGAGATAGACTGCAGCTCTCTGATTCAACTCAGGGTAGGTCTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAACCTCCTGGGAGTGTCTTTAAAATGAAAACTTGTGTTTCTCTATTCTCAACACTTCTGACACCAAATGTATGTGGAGTTTTCCCACACCAACCAATTCTCCAACTCTGCGGATAGCAACTGAGTGTCCTACAATTCAGTTCTTAATGCTGACTATCTAAAGTTAATGCAGACTCCACAGGTTTAAGGCTCAGTCTCACAAGATTGCCCCCATCCCTGACTTCAGATGTCAGTTGCAAGTTCCAGGTTGTTACCTGTACTTCTGACCAACTGGCTGTTGTTTGGGGGTTCCGACAACCTCCTCCTTAGGTTTGATAATTTGTTATAAAAGCTCACAAAACCCTTTATTATAGAGGGTATTATGAAGGATACACATGAACAACCAGATAAAGAGGTACACAGGACAAGGTGTGTGAAAAGCAGTGCAGAACTTCCATGCCCTGTCCTAGTATACCACCTTGGCAGCACCTCAGTGTATTCACCAACCCGGTAACTCTTCAGAGCCCATAGTTTAGATATTTTTAGGCAGGCTACATCATGTGGTCATGACCAGTTATTAGCACAGCCTCCAATCCCTCTCCCACTCCCTGGAGGATTGGGGGTGAGGCTGAAATGTCCAAGCTTTTTTTTTTTTTTGAGACGGAGTCTTTCTCTGTTGCCCAGGCTGAAGTGCAATGGCGTGATCTTGGCTCCTCCACCTCCCAGGTTCAAGCGATTCTCCTGACTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCACCACCAGGCCCAGCTAATTTTTTAAATTTTATTTTTAGTAGAGATGAGGTTTCACCATGTTGGCCAGGCTGGTCACGAACTCCTGACCTCAAGAGATCCACCGGCCTCAGCCTCTGAAAGTGCTGGGATTACAGGCACGAGCCACCACGCCTGGTCTGAAATTTCCAAGCTTCTAACCATGGCTTGGTCTTTCTGGTGACTAGCTCACATCCTGAAGCAGTCCAGGAGCCCACCAAAAGTTGCCTCCCTAGAACAAAAAGATGCTCCTATCACTCAGGAAATTCCAAGGGAGTTGGGAATTCTGTGTAAGAAACCAAATCAAATATCAAATCGAAGACCAAATATTAGAACAAAAGATGCTTCTAGCAGCTTTGTCACTCAGGAAATTACAAGGGCTTTAGGAGCTCAGTGCCAGGAACCAGGGCAGAGACCAAATATATATTTTTTTATTATGTCAGTCTTGAAACCTCTTCTGGACACTATTCCTTAAACATTCAGGAAGGGTGAAGGGCATGGCGTTTAAGTCAAGATTTCTGAGTTAAAGGATTTCTACAAATGACTGTATTTGAATTTTTATATATTTTTTACTTTTTATTGAGACAAAATTCACATAACGTGAAATTCATCATTTTACTCATTTTACAATATTCAATTCAGTAGTTTTTAGTATACTCACAGTGTTTTGTTGTTTTGTTGTTGTTGTTTTTTTCAGAGTCTCACTCTGTTGCCCAGGCTGGAATGCAGTAGCACCATCTCAGCTCGCTGCAGCCTCCACCTCCTGGGTTCAAGCGATTCTCGTGCCTCAGCCTCCCAAGTAGCTGGGATTACGTGCACCTGCAACCATGCCTAGCTAATTTGTGTGTGTGTGTGCTTTTTTTTTTTGAGACGGAGTCGCACTCTGTCACCCAGGCTGCAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCTTGAGTAGCTGGGACTACAGGCGCATGCCACCACACCCAGCATTTTTGTATTTTTAGTAGACACAGGGTTTCACCATGTTGGCCAGGATGGTCTCAATCTCCTGATCTCATGATCCACCCGCCTCGGCTTCCCAAAGTGCTGGGCCTGGCCTAATTTTTATATTGTTAGTAGAGATGGGGTTTCGCCATGTTGGCCAGGCTTGTCTCAAACTCCTGACCTCAAGTGATCCACCCACCTCAGCCTCCCAAAGTGCTAGGATTACAGGTATGAGCCACCGTGCCCAGCCTGTATACTCACAATGCCATGTAACCATCACCACTATCTTATTGCAGAACATTTTCATTGCCCACAAAATAAACTTATACACATTATCAGTGACTTCCCATTGCTCCCTTCCCCTAGTCCCTGGCAACCACTAATCTGCTTTCTGTTTCTATGGGTTTGCCTATCCTGGATATTTCATATAAATGGAGTCATACAATATGTGGCTTTTTATGTCTGGCTTATTTCACTTAACATAATGTTTTCAAGGTTTATCCATATTTTAGTATATATTTGTACTTCACTCCTTTTAATAGCTGCATAATATCCATTCTACTCACCTGAATGTTTGCCCATTCCTCAGCTGATGGACATCGGGTTGCTTTCACCCTTTGGCTATTGTGAATAGTGCTGCTATGAACATTAGTGTTCACGTTTTTGTTTGAACACCTATTTTCAGTTATTTTGGGTAAATACCTATAAGTGAAATTAATGGGTCAGATGGTAACTCTATGTTTAACTTTTTTGTTTGTTTGTTTGTTTTACTTTTTGAGAAATTGCCGTTAGTGTGAAGTAGTACCTTGTGGTTTTGATTTGCATTTCTCTGTTGACTAATAATGTTGAGCATCTCTTCATGTGCTTATTGGCTATTTGTATACTTCTTTGGAGAGATATCTATTCCAGTCCTTTGCCTGTTTTTTTGGTTGGGTTCTTTATCTTTTTGTAGTTGAGCTGTAAGAGTTTTTTTTGTTTTTGTTTTCTTTCCATTTTTTTTTTTTTGAGATGAAGTCTCACTCTGTCACCCAGGCTGGAGTGCAATGGTGCGATCTTGGCTCACTGCATCCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTTAGCCTCCTCAGCAGCTGGGATTACAGACGTGCACCACCACGCCTGACTGATTTTTTTTTTTTTTTTTTTTTTTTGTATTTTTAGTAGAAACAGGGTTTCACCATGTTGGCCAGGCTGGTTTCAAACTCCTGACCTCAGGCGATCCACCAGCCTCAGCCTCCCAAAGTGCTGGGATTACAGATGTGAGCCACTGTGCCCAGCTTTTTTTTTTTTTTTTTTTGAGACAGCCTCTCACCTCTCACTTTGTTGCCCAGGCTGGAGTGCAGTGACAGGATCTCACCTCACTGCAATCTCTGCCTCCCAGGCTCAAGTGATCATCCTGCCTCAGCCTCGCAAGTAGCTGGGACCACAGGTACAGGCCAATTGCCTGGCTAATTTTCGTATTTTTTTGTAAAAATGGGGTTTTACCATGTTGCCCAGGCTGGTCTCAAACTCCTGAGTTCAAATGATCCTCTCGCCTTCGTCTTTCAGAGTGCTAAGTGAGATTATAGTCGTGAGCCACCGCACCCAGCCTGTAAAAAGTTTTTAAGTGTATATTCTAGATCCTAGGCCCTTGTTAGTTATATGATTTGCAAATATTTTCTCCTACTCTGTGGATTGTCTTTTCCCTTTATTGATAGTATTTTTAAATTTAAAACAAAAGTTTTAAATTTTGATGAAATCTAATTTATCTTTTTTTTATTTGTTACTTACGCTTTTGCTATTATATTTTAAAAATTATCGTCTAGGATTTATACTTATATTTCTTTTTAAGATTTCATAGCTTTGGTTCTTAGATTTAGATCTTTGGTCCATTATGAGTACATTTTTGTATATGGTGTGAGGTATGGGTCTACATTTATTCTTTTTCATATAGATATTAAGTTGTCTCAGCACTATTTGTTGAAAAGACTATTCCTTCCCCATTGAATGGTCATGGCATCCTTGTAAAAAGTCTATTTACCATAGATATATGGGATTGTTTCTAGACTCCCAATTCTATTCCATTGTTCCATATGTCGGTTGTTATGCCAGTACCACAATGTCTCAATGACTGTAACTTTCTAGGAAGTTTTGAAATTAGGAAATATGAGTCCTCCAACTTTGTTCTTCTTTTTAAGATTGTTTTGGCTATTCTGAGTCCCTTGCATTTCTATATGAATTTTTAGGATCAGCTTGCCTATTTTTGCAAAAAAAAAAAATAATAATAATAATAATAAGGTATTGGAATTTTAGTAGGGATTACATTGAATCTCTAGATTGCTTTGTGTTTATTTTTATTTTTTTGAGATGGAGTCTTGCTCTGTTGCCTAGGCTGGAGTGCAAAGGCTCAATCTCAGCTCACTGCAACCACTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCTGACTCCCGAGTAGCTGGGATTACAGGTGTGTGCCACCATGCCTGGCTAATTTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGATCTCGACCTCCTGACCTCAGGTGATCCACCCACTTCGGCCTCCCAAAATGCTGGGATTACAGGTATGAGCCACTGCACCCAGCCTCTAGATTGCTTTGGATAGTAATGTCATATTAACAAAATTAAGTGTTCCAATCTATGAACACAAAAGGTATTTCCATTTATTTAGGTCTTCTTTAACTTCTTTCAGCCATGTTTTACAGTTTTCAGTGTACTTGCCTTTCTTGCACTTCCTTGATTAAATTTATTTCTAAATATTTTCTCTTTTGTGATACTAATGTAAATGGAATTTATTTTTGTAATTTCATTTTTGGATTGTTCACTGCTAGTGTAAAGAAATACAACTCCCATTTGTATATTTATCTTATATCCTGACATTTTCCTAGGCTCATTTATTAGCTCTAATAGCTTTTTGTGGATTCTTTAATGTTTTCTATATATAAGTTTATGTGATCTGCCAAGAGGCAATAGTTTTACGTCTTTCTTTCAGTCTCGATGACTTTTTTTTTCTGGCTAATTTCCCTGGCTACAACTTCCAGTAGAATGTTGAATAAAGTGGCAAGAGCAGACATCCTTGTCTTGTTCCTGATCTTTGTGGGGGAAGCTTTCAGTTTCACCATTAGGTGTGATGCTATCTGTGTTTTTTTCATAGATGCCTTTCATCATGCTGAGGAAGTTCCTTTCCATTCCTAGTTTGCTGAGTGTTTTTATCATGAAAGTGTGTTGGATTTTGTCAAATGCTTTTCTGTGTCTACTGAGATTGTCATGTGATTTTGGCCCTTCTTTCTGTTAAATATGCTATATTACTGCAGTGCAGTTTGACTCTAACAATGGGCTGGGTGTGGTGGCTCGTGCATGTAATCCCTGCTCTTAGGGAGACAGAGGCGGGAGGATAGCTCGAGCCCAGGAGTTCAAGGCTTGCCTGGGCAATATAGCGAGACCCCATTCTCCAAAGAAAAAAGGAGAAAAAAAAGACCAAAAAAAAAAGTGTGACTTTAACAATAGAGTTAGCATAGGCTTCACACATTAGAGGTATAGTCCCCCACAAGATTGCCCCCACTTTGGAACCCACAAGCTTGGAGGTTCCCAAACAAACAAAGCACTTCTGACAAACTGGCTGCAATTGTGGAAGTCCCACTATTCTCTCAGGTTTGTTAATTCACTAGAACAACTGACAGAACTCAGGAAAGTACTATACTTATGATTATAGTTCTATTCTAGAGGATACAATTCAGGACAGGCCAACAAAATAGCTGCATGGGTGGGGTCTGGGAGAGTCCCAAATGCAAAGCTTCTGTGTCCTCAGGACGTAGCACCCTCCCAGCATATTGGTGTCTATTGGGTTAGCTCACCTAAGCTTTGAGTATCCAGTTTTTATTGGGGTTTTATTACACAAGCATGAATGATTGAAGCATTGGCCACATCATTGAACTCCATCTCCAGCGTTCTTTCCACAACCCAGGAAACTCGGAGGCAGGGTGACATCACATAGCTCAAAGCCCCAGCCTTCTAATCACATGGCTGGTCTTTCTAGTGTGACCATCCCACATCCTGAGTCACCTCCTTAGCATAAACTCAGGTATGATGATGGCAGGGTGGAGATCCACTATGAGGAACAAAGATACTCCTATTACTCCAGAAATTTTAAGCATTTACAGGCTTCTTTCCAGGAACCAGGGACAAGGGCCAGCCAGTTCTTTATTATAAAAACTGAAACCCTGGTTTTTCATGTGCTCAGCCTCCCTTGCATTCCTGAGATAAATCCCACTTGGTTGTGATGAATAACCCTTTAACATGCTGCTGTATTTACTTTTTAACATCGTAAGTTTATTTACATGGTTCAAATGCAAAAGCCTTTGTCCATCCCTTTCCCTGAAGGTAATGAGTTTCTGGTGTAAGTTTTTATGTATATGTATACACACAACAAAATGTTCGCTGGTCAGGGTCGGCCTCCCGCCAGGAGCCCTGCATCTCCCTGCGTCCCCTGTCGTTGCAG
Seq C2 exon
CTGAAGGGCCTGTCACGTCAGAAGTGCCCTGAAGTCAAGCAGGTGCTGCACATCATAGGCCTGGAGGACAAGTGGAACTCACGGAGCCGCTTCCTGAGCGGGGGCATGAGCCGCAAGCTCTCCATCGGCATCGCCCTCATCGCAGGCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000238098-ABCA17P:NR_003574:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)